RNA id: TU277841


Basic Information

Item Value
RNA id TU277841
length 704
lncRNA type intronic
GC content 0.51
exon number 1
gene id G244734
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1559799 ~ 1560502 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCAGAGTGCCCATGCTGACCCCTGTCCACCGTCGAAAGCGCCAACAGTGGACACGTGAGCATTAGAACTAGACCACGGAGCAATGGAAGAAGGTAGCCTGGTCTGATGAATCACATTCTCTTTTACATCACGTGGATGGCTGGGTGCGTGTGCATCGCTTACCTGGGGAACACATGGCACCAGGATGCACTATGGGAAGAAGACAAGCCGGTGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGGGTCCTGCCATCCATGTGGATGTTACTTTGACATGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGCTCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGTAGCACAACAACGAGTTTGAGGTGTTGACTTGTCCTCCAAATTCTCCAGATCTCAAAGAGCATCTGTGGGTTGTGCTGAACAAACAAGTCCGATCCATGGAGGCCCCACCTCACAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTTGGTGCCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATGCCTTGACGGGTCAGGGCTGTTTTGGCAGCAAAAGGGGGACCAACACAATATTAGGAAGGTGGTCATAATGTTATGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277829 lncRNA downstream 23878 1535630 ~ 1535921 (-) True G244722
TU277831 lncRNA downstream 27590 1531913 ~ 1532209 (-) True G244724
TU277839 lncRNA downstream 29002 1530593 ~ 1530797 (-) True G244732
TU277838 lncRNA downstream 30462 1528941 ~ 1529337 (-) True G244731
TU277837 lncRNA downstream 31086 1528032 ~ 1528713 (-) True G244730
TU277843 lncRNA upstream 2712 1563214 ~ 1563431 (-) True G244736
TU277845 lncRNA upstream 3719 1564221 ~ 1564509 (-) True G244738
TU277847 lncRNA upstream 9546 1570048 ~ 1570261 (-) True G244740
TU277851 lncRNA upstream 14651 1575153 ~ 1575373 (-) True G244744
TU277854 lncRNA upstream 21191 1581693 ~ 1581904 (-) True G244747
CI01000057_01542990_01546030.mRNA mRNA downstream 13769 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01471460_01487413.mRNA mRNA downstream 72037 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01356170_01359401.mRNA mRNA downstream 199829 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01261251_01262315.mRNA mRNA downstream 297484 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01252690_01256408.mRNA mRNA downstream 303391 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01707526_01708449.mRNA mRNA upstream 146993 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01801708_01806454.mRNA mRNA upstream 241026 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01904867_01921400.mRNA mRNA upstream 344031 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_02200951_02207673.mRNA mRNA upstream 640078 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 687844 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
TU277370 other downstream 988771 570530 ~ 571028 (-) True G244358
TU277369 other downstream 988885 570530 ~ 570914 (-) False G244358
TU277905 other upstream 241082 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 359554 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2331233 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3368242 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3368242 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile