RNA id: TU277774


Basic Information

Item Value
RNA id TU277774
length 826
lncRNA type read_through
GC content 0.50
exon number 3
gene id G244676
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1582943 ~ 1701880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTTTTGTGTGCACAGTTATTCTGTGAACTTTATAAGCTAAACATTAGACAAAGCATTGTTGGTAATATTTACTGGTTGTTTAGGCTAAACCATGTCAGTTACTAGGGGAATTCATTATGTTTTGTTATCCTGTTGCACACATGTAATTCGTATGTTGATACTTTACAAACAAACATGTAATACAAACGTTTACAGTCTTTTTTTCAATTGCTAACAAGCATTTTTCAATACTGAAGCCACATTTTCAAAACATCAGTGAAACAGAAGTCTATGTGGACCAAACTGTGAATCATTTTTCATTGCTTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277854 lncRNA downstream 68587 1581693 ~ 1581904 (-) True G244747
TU277851 lncRNA downstream 75118 1575153 ~ 1575373 (-) True G244744
TU277847 lncRNA downstream 80230 1570048 ~ 1570261 (-) True G244740
TU277845 lncRNA downstream 85982 1564221 ~ 1564509 (-) True G244738
TU277843 lncRNA downstream 87060 1563214 ~ 1563431 (-) True G244736
TU277796 lncRNA upstream 79868 1781748 ~ 1785550 (-) True G244693
TU277917 lncRNA upstream 116377 1818257 ~ 1818595 (-) True G244805
TU277918 lncRNA upstream 117763 1819643 ~ 1819987 (-) True G244806
TU277919 lncRNA upstream 119031 1820911 ~ 1821170 (-) True G244807
TU277921 lncRNA upstream 123404 1825284 ~ 1826279 (-) True G244809
CI01000057_01559593_01572133.mRNA mRNA downstream 77641 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 104461 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01471460_01487413.mRNA mRNA downstream 162729 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01356170_01359401.mRNA mRNA downstream 290521 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01261251_01262315.mRNA mRNA downstream 388176 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01707526_01708449.mRNA mRNA upstream 5615 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01801708_01806454.mRNA mRNA upstream 99648 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01904867_01921400.mRNA mRNA upstream 202653 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_02200951_02207673.mRNA mRNA upstream 498700 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 546466 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
TU277370 other downstream 1079463 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1079577 570530 ~ 570914 (-) False G244358
TU277905 other upstream 99704 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 218176 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2189855 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3226864 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3226864 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile