RNA id: TCONS_00018921


Basic Information

Item Value
RNA id TCONS_00018921
length 2465
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_008423
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18788416 ~ 18792858 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttTCCCTAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAACTGTAAAGTGAAGTGTTAAAGTTAAATTTGAATTTTTATGATTGTCATTATTTTTGACTTATATTTGATCCAATAGGTGATTCCTGCAATTGGTGAggatgaatcatcttttgaggGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGATCCCACATTTTAAATCAGTTCtcagtttaaattaaatgtttaatgtcagTATAAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaatattttatttttcaagctTTATGGTGAACACGTGTGCATTCAAGCTTACAACTATTTGTACAGTGATAACTAAAGGGAAATGGCAACAAAGAATATtagatatagtttttatttaaagtgaatcactaatttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAAGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTACCATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGGGATCATTAAGTGCCTTTTCAAGCTGCATTTAGAAAGGTTAAACTCATAGGCCTTATATACAAACCCTTTATATAGAGAACATTTCtcaatgtttttctttaaaaaatgtaattcataaaaatacattaaatatcttTCATTCAGCATTTGCTAAAGgttccaatattttttttctttattttaaaaacgggtactttatattattaaatcatttaagaGTACttcattatttatctttattttatttaaaggtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggTGGGGTGATGATGATGCTCCTTACCCACCTCTACAGATGGTTGAAAGTCCTTTGCAAAGTGTTGGAGATTAGGAGTTAAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAACAACAATTTAAATTTGAAGATTAGCAATGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTACATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTGtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTCCTAATGAAATACAGTTTAAATGTCAATACTGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTTTTGTATGTTTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAGAAATATACTTCATGAGGTCTAGTGCTGTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTActggtgttaaaaaataatattaagcttttttgctgtttcataaaatgtttaagcagctattttttaagtttatgcaTCTGGTAGGACATTGTGGTAATTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaatttttttgaatCTTTCAATGAGTGTTTGTGATAAAATGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043297 apical junction assembly biological_process
GO:0010648 negative regulation of cell communication biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0023057 negative regulation of signaling biological_process
GO:0009968 negative regulation of signal transduction biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0120192 tight junction assembly biological_process
GO:0120193 tight junction organization biological_process
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018918 lncRNA upstream 388795 18385590 ~ 18401208 (+) True XLOC_008422
TCONS_00018917 lncRNA upstream 399871 18385590 ~ 18390132 (+) False XLOC_008422
TCONS_00016859 lncRNA upstream 646104 18140880 ~ 18143899 (+) True XLOC_008421
TCONS_00016856 lncRNA upstream 853875 17906777 ~ 17936128 (+) True XLOC_008419
TCONS_00016855 lncRNA upstream 867148 17901111 ~ 17922855 (+) False XLOC_008419
TCONS_00016861 lncRNA downstream 71014 18863872 ~ 18907723 (+) False XLOC_008424
TCONS_00018922 lncRNA downstream 363032 19155890 ~ 19157908 (+) True XLOC_008425
TCONS_00018768 lncRNA downstream 389990 19182848 ~ 19187834 (+) False XLOC_008426
TCONS_00018769 lncRNA downstream 389998 19182856 ~ 19187787 (+) True XLOC_008426
TCONS_00016863 lncRNA downstream 491984 19284842 ~ 19286143 (+) True XLOC_008427
TCONS_00016858 mRNA upstream 634012 18130109 ~ 18155991 (+) False XLOC_008421
TCONS_00016853 mRNA upstream 933125 17848590 ~ 17856878 (+) True XLOC_008418
TCONS_00016850 mRNA upstream 1032977 17752928 ~ 17757026 (+) False XLOC_008417
TCONS_00016852 mRNA upstream 1032981 17756113 ~ 17757022 (+) False XLOC_008417
TCONS_00016848 mRNA upstream 1042227 17743136 ~ 17747776 (+) True XLOC_008416
TCONS_00016862 mRNA downstream 71017 18863875 ~ 18988585 (+) True XLOC_008424
TCONS_00016865 mRNA downstream 500886 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA downstream 500985 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016867 mRNA downstream 507372 19300230 ~ 19320615 (+) False XLOC_008429
TCONS_00016868 mRNA downstream 507585 19300443 ~ 19313440 (+) True XLOC_008429
TCONS_00016857 other upstream 703187 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 1033236 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 1373396 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 1416088 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 1688335 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016870 other downstream 531869 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 542809 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 1197265 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 1562937 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 1736422 20529280 ~ 20535484 (+) False XLOC_008450

Expression Profile

//