RNA id: TU277929



Basic Information


Item Value
RNA id TU277929
length 4134
lncRNA type read_through
GC content 0.39
exon number 3
gene id G244814
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1834717 ~ 1910969 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCACATTTTTTATTTATTTCTCTGGAGGAATGCTTTAACCGTCATTAAATAAAACCTGTACAGTATTTACAGTCAGATATTTTACACCCAGTTTGGTCGCATGCACATGTAACAAAAAGAAAGAAAGTCTGTACAAACATTTACATTCCTTGGGAGGAGTCAATGCGATAAAAGGCACCTGTGACCGTTGTTGGTATACGCCCCGCCGCGTTTCACAAGCCCTCAGCAGTCGCCTAAACCGTCAGCTGAACTCGAGCTGAACGCCTCGAAAATGACTGATTGTTCTGTCAAGCCTTTAATTTCAGCCTCTTTTTCTCTATTACTTAAATGTCTTTTCTAATCTGCGTATTAACTGCGTACCTGGGTTGCCAGGTAACTAGTAAGCACCCATTCAAACATTTTTTTTTCTTTTTTTTTTTTTTTTTTTTAAATCAAGCACTTCAAGGAATCGTGTCCCTTTAGTTCTACTTTTGGAGTGTAAATTATCATATGCAGTAGAAGACAGAACAATATAATTCAAGGTTTTACCACAAATTCAACTCCATCATCCTGATATCGCGGCACAACCCCTAGTATCATGGTATACTATTCCAAACATAGCCAAATTTATTCTTTAAACAATAGTCATTATGACATTTTACAGTGTTTTGGGCCATGAATACAAAGAGTACAGTATAATTAATGGCACGAATCTGTTTTAAAAGGTCTTAATAGCTTAATAGAAAGCTTTCATTATGAATTATAAAACTAAAAGATTATGGTCAAAATAGTCTAAATAGCCAGGCAATGTTTTAAAAATGATTCACTAAATGGTCATTGAGTCCTTTGAGCATCAGTGTTTCCCTTTGTGAGCCGGTCAATTCCCCATGTGTGCATCCCATTATTGATCACATTGATTTTTACAGAATAATACATTACTCTTGAAACGCTTTTTAAAAACAGAGAAACAGAGCGCATGGAGCTTCAGGTCATGAACAAACATGCACAAAACTAGCCTTTATTCACAGTACTAAACCACAAGGACTATAAACACCAACGCTTATAGGCCCAGGCAGACTTTTCAATCCCATGTGAACCTACTTATGGCTAACCTAAACTTGAACAAGAAATCAGTTTCCACACAATAATCCAAAGCAAGCACTTTCCACAATGTGTCTATATATCTACTCTGTCATCGTAGCTTCCACTTTTGCATGGAGACTCAACAGCACTGCAGGTGAATAATAGCCTAGCGTGCTAACATCTGCTACCACAGACGCCATATGAAGCTCCTGAGGACCAGAAGAACGGACACTAGCAGACCATCATATGGTGAATAGAGAGTTTCTGGCTTGGTTCTTGAGTCCCTTTGCGATTTTGGCACACTCTAGAATTTTCAACTGTGCCAAACTTTACCTAAAGATGCATTGAGAGAAAGTGAAAAGGACAGGCCACAGCAGGTATGTTGGCCCATGTCATTTATTAAACGAGGGGCAGCTGGGAAAAGCAGGTGAGGAAATAAGCAAGTGAGAACTGCCAAGGTACAGGCCTTTCCAGAACAGACTGTTGCCAGGATATTCTAAGCCCAGAACCAAAGAACAAAAGCAGACAATCATATATAAAGGAGCTTTCGCACCATTATAGGAAGTCAAATATAGGAACTAGACACCAGGATGGTTCCCAGAGAACAAAATTTTTCCCTAGGGCATTTTCCTGATTGCATTCGCACCGCAGGTAGGAACTCTGAAATGATGTAAGCCTTAACTTACGTCCTGCCACTCTGGTTGTTGCAAGACTTTTATTTTGAGGGCGCTGAGAACACCAGAGCTTGAGCACACAGCGCTTCATTAAAAATGGCAGATGCCAGTGATTCGGCCAATCAACATACACTTACGTCACTGATAGATCCTATTGTGCTGGGTTAGACCCTACTCTGAAGTAGGAGCTAATTTAGTTTTCCCACCCCCAAATGGCATTCCTATAACTAAAATCATTCCCAGCTCCTGTGGTACGAACACGCCAAAAAGCGGGTACTTCCATCTTCCAACAATAGTTACAGGAACTATGAAAACGTTCCAGCCCCTTATAGGAACTTTATTATGCTGCAACGCATTCTAGTTCCTCGGCACATTAACATGGTCTCAGTGGCCAGCCTGCACTGTAATTGAAAAGCTTGAGGTATAGTACCTGCATGCTCTCTCTCTCTTTCTCTCAAGTCACTTTGTTAGATTGCATTGCTTAATCTCCATAACTCAACATATGAGTAGCGCCTGTGGACGCCTGCCACTCCCCTGTGCTCTAGCTGGCACAAAACCAAATGTATACGCATGCAAATCCATCACGTTTAAAAATACACGCATGCAAATGCACACAGGATGACCGAACCACAATTCAGACAGTCTATAATATTCCATATAAACGTACAAACACATAACACACGGAAACTTTAACAAAACCTATTGATGTCTATTGTCCAGGCTTCTAAGGCACCATCATAAAATGAACAAAATTTGAGACACTGCTCATTGTCAACAACTTCACATGCCACAAAAATATAGCAATTCAAGTCAAATGCATCTTAACAACTGACTGACATTAGCATTTTGGAATCGATTCTCTTGTTACACTTCACTTGAGGTTTCATACAGAGGTTTTAAGTTACCTACATTTGGTTCTTGACCACTGAAAATGGGTAAAATTCAACAATTTGGACATGGAGTCACATTGGGGACCGATTATCTATGGGACCAAAATTTATAGGGCATTGAGAATGAAGATTTCAAAAAGAAAGTTTATTAAGAATGAGAATCTACAGGGATATCTTGAATACTTTTAGAGTTACAGGAAACTTTGGAAAAGGAATATTTTATGGCACTTTATGACACAGGTATGTTCAGTGCAATTGTGTTGATAGAAAAACACGAGATACATTTCTAGTTTTAACATTATTTGTTCTTTAGATATTCCTCTTTAAAAGAAAGAGTATCAGCTGTAAGCAAAGTGACCCACATTTGGTTTCTGACCACTGAAAATGTACACAATTTACCAATTTACTCTTGGAGCCACATTAAGATCTCCATATCTCTGGGATTGAACCATCGCGGGCCTTTAATATGAAGATACCAAAAGGAAAGTTTGTTAAGAACCAGAATCTAAAAGGATATTAAGATATCTTTAATACTTCTTGAGCTACAGGCATGCAAACTTGAGGCAAAAAACAAAAACAAAAAAAAACAAACAAAAAAAAAAACACGAGAAGTGCTTTTTGCCATTTTTGAACTGTCACCGTTGGCATATAATGCAACTAAAATTATGAAAGTCAACAGATTTTACTAATAGAGCTACCAATCTCTGTGAAAAAAATAAATAAAATGACCACAGAGGAGAATCGGAGGACAGACACCCTTTTATTCTTTGACAGACAATGACACACTGTATTTTTTCCACTCAGCAATGTGATTATTTTATTGAGTGATAGGGAGTGGGTTCAATCAGTGACATTATTAGATTTGATATACGGCGTCTCCCCGTCACCTCCTCAACCTGCTTTCCTTAGTGTGATTTTACACGTAGAAAAGGCGAAAATTGTATTACACCGTCCAGTTTTTCCCCTGAACGATGATGTGAGCTCCTGTTGCAAGTCTCAATTCAGCATAAATTACCTACAATGGTGACATTTTTCACAATCACGACAGAAAATCAAAAATACTGCCCTTAATGTCACTAGTAGAAAGGCAGCGCGATATAAACAAACCCAGAACTGAACACGGCGTGACGGCAGCTTCACATTCTCTATATCTACCTCCTCGATGGCAGTCAAGTCTTTCAACTCAGTAGAAAAATCGCTCCTCTTCATAACATAAGGTTCACGTCCAAAATATGTTGTGATTTTCTGTTTATACCTTTCTAAAAACCATGTGACTGCAAACAACCTATTAATGGTTCACACAGATCTTGAGCTCTGATTCCAAAACTCCCGTTCTCATCTAGCCTACAACTCCCAGAGGGCCGTTCAGAGATCTGTGAGGTCTGCAGGATGGGATTACCCCCATTACAGAGATCTGAGGAGGGCTTTGCGCACAAAATAGTCATGCGCCGGCCATTCGAGGAGGCTGAGGGGAAAAGTAACAAAAAAGCAGAATAATGCTTTTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU277925 lncRNA downstream 1114 1833351 ~ 1833603 (-) True G244813
TU277924 lncRNA downstream 1661 1832592 ~ 1833056 (-) True G244812
TU277923 lncRNA downstream 2361 1830318 ~ 1832356 (-) True G244811
TU277922 lncRNA downstream 6378 1827699 ~ 1828339 (-) True G244810
TU277921 lncRNA downstream 8438 1825284 ~ 1826279 (-) True G244809
TU278003 lncRNA upstream 144149 2055118 ~ 2077524 (-) True G244886
TU278030 lncRNA upstream 194215 2105184 ~ 2105429 (-) True G244913
TU278027 lncRNA upstream 198123 2109092 ~ 2111515 (-) True G244910
TU278031 lncRNA upstream 201383 2112352 ~ 2112664 (-) True G244914
TU278032 lncRNA upstream 202976 2113945 ~ 2114154 (-) True G244915
CI01000057_01801708_01806454.mRNA mRNA downstream 28263 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 126268 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 261867 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 288687 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01471460_01487413.mRNA mRNA downstream 346955 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_02200951_02207673.mRNA mRNA upstream 289611 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 337377 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 347425 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 463580 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 490851 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277905 other downstream 29564 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1263689 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1263803 570530 ~ 570914 (-) False G244358
TU277965 other upstream 9087 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 1980766 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3017775 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3017775 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3300141 5211110 ~ 5283617 (-) False G246780

Expression Profile