RNA id: TU278031


Basic Information

Item Value
RNA id TU278031
length 313
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G244914
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2112352 ~ 2112664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCCGAATACCTCACGCAGACTTACTGAAAATGTCAGAAACTGTTCAGCCTTTTATGTTCAAACCAGAGTCAGACACTGATGGAGAAACTCAAGAAGAAGTTACAACATGTAGAATGCAACAGGACGTTTCTGAATGGTTAGTGGATGAATTTATGTAGCTGATGTGAAGTTAACTATATGGAGTTAATATTGTGCCATAATTAAACAAACAAATCCAGCATTTTGCAAACAAACACGATCTGCTTTGCAAAGGAAAACTCGACTCGCAAACAAACAGAAAGTGATGTGCAAATACAAAGGTCAGTTTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278027 lncRNA downstream 837 2109092 ~ 2111515 (-) True G244910
TU278030 lncRNA downstream 6923 2105184 ~ 2105429 (-) True G244913
TU278003 lncRNA downstream 34828 2055118 ~ 2077524 (-) True G244886
TU277929 lncRNA downstream 201383 1834717 ~ 1910969 (-) False G244814
TU278032 lncRNA upstream 1281 2113945 ~ 2114154 (-) True G244915
TU278033 lncRNA upstream 10061 2122725 ~ 2148104 (-) True G244916
TU278042 lncRNA upstream 22010 2134674 ~ 2135249 (-) True G244922
TU278049 lncRNA upstream 45249 2157913 ~ 2158120 (-) True G244928
TU278052 lncRNA upstream 57698 2170362 ~ 2170733 (-) True G244930
CI01000057_01904867_01921400.mRNA mRNA downstream 190447 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 305898 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 403903 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 539502 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 566322 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_02200951_02207673.mRNA mRNA upstream 87916 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 135682 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 145730 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 261885 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 289156 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277965 other downstream 190931 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 307199 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1541324 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1541438 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1779071 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2816080 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2816080 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3098446 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3810876 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile