RNA id: TU278032


Basic Information

Item Value
RNA id TU278032
length 210
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G244915
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2113945 ~ 2114154 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACAACACGTTCATTGAGAGCTCTCATTGATTCCGGTGTCAATTCATCTGTGCTTGCATGCAGTACTGACCTTTAACTTTAATTACTGCCAGTTCCGTTAAAGGCTGTGATCCTCACGCGGCTTTAAATCTAAGTTCTGACAGTTCAATTCCTCATTCAAACCGAGACTAAACATGTGATTCAAAGACAATGCCTTTCAAACATCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278031 lncRNA downstream 1281 2112352 ~ 2112664 (-) True G244914
TU278027 lncRNA downstream 2430 2109092 ~ 2111515 (-) True G244910
TU278030 lncRNA downstream 8516 2105184 ~ 2105429 (-) True G244913
TU278003 lncRNA downstream 36421 2055118 ~ 2077524 (-) True G244886
TU277927 lncRNA downstream 202976 1906732 ~ 1910969 (-) False G244814
TU278033 lncRNA upstream 8571 2122725 ~ 2148104 (-) True G244916
TU278042 lncRNA upstream 20520 2134674 ~ 2135249 (-) True G244922
TU278049 lncRNA upstream 43759 2157913 ~ 2158120 (-) True G244928
TU278052 lncRNA upstream 56208 2170362 ~ 2170733 (-) True G244930
TU278061 lncRNA upstream 94776 2208930 ~ 2209229 (-) True G244939
CI01000057_01904867_01921400.mRNA mRNA downstream 192040 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 307491 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 405496 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 541095 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 567915 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_02200951_02207673.mRNA mRNA upstream 86426 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 134192 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 144240 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 260395 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 287666 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277965 other downstream 192524 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 308792 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1542917 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1543031 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1777581 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2814590 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2814590 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3096956 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3809386 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile