RNA id: TU278049


Basic Information

Item Value
RNA id TU278049
length 208
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G244928
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2157913 ~ 2158120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGATGTTTGACGCATGCGCGGTTTTGAGCAATGTCTCGCCCATGTAAACATCTTTGTATTCTTTCCTGCTAGAGTTGTACAAATGACGGTACTTTCTAACCTCTTCACACAATCTCTCGACTATATAGGCCTCCATTGTCGCTGTAGCTTGCATGCGTTCCGGTCTGTTCTGTTTATGCAGGTTTTCTTCGACTACCTTGTGAATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278033 lncRNA downstream 9809 2122725 ~ 2148104 (-) True G244916
TU278042 lncRNA downstream 22664 2134674 ~ 2135249 (-) True G244922
TU278032 lncRNA downstream 43759 2113945 ~ 2114154 (-) True G244915
TU278031 lncRNA downstream 45249 2112352 ~ 2112664 (-) True G244914
TU278027 lncRNA downstream 46398 2109092 ~ 2111515 (-) True G244910
TU278052 lncRNA upstream 12242 2170362 ~ 2170733 (-) True G244930
TU278061 lncRNA upstream 50810 2208930 ~ 2209229 (-) True G244939
TU278088 lncRNA upstream 76695 2234815 ~ 2235090 (-) True G244963
TU278063 lncRNA upstream 89293 2247413 ~ 2247724 (-) True G244941
TU278071 lncRNA upstream 182011 2340131 ~ 2341614 (-) True G244949
CI01000057_01904867_01921400.mRNA mRNA downstream 236008 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 351459 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 449464 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 585063 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 611883 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_02200951_02207673.mRNA mRNA upstream 42460 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 90226 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 100274 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 216429 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 243700 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277965 other downstream 236492 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 352760 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1586885 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1586999 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1733615 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2770624 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2770624 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3052990 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3765420 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile