RNA id: TCONS_00016862


Basic Information

Item Value
RNA id TCONS_00016862
length 2332
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_008424
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18863872 ~ 18988585 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGGGTCAGAACCTGGTGACAAATAATGTCTCAGTGGTGGAGGGCGAGACGGCCATCATCAGCTGCCGGGTGAAAAACAACGACGACTCCGTCATCCAACTGCTCAACCCCAACCGGCAGACTATCTACTTCAGAGACGTTAGACCTTTGAAGGACAGTCGGTTTCAGCTGGTAAACTTCTCCGACAACGAGCTCTTGGTGTCCCTGTCCAACGTGTCTCTGTCGGACGAGGGCCGCTACGTGTGTCAACTCTACACGGATCCACCGCAAGAAGCCTACGCCGACATCACTGTACTGGTTCCACCAGGCAACCCAATCTTAGAGTCCCGCGAGGAAATCGTGAGCGAGGGGAATGAGACCGAGATAACCTGCACCGCCATGGGCAGCAAACCTGCTTCCACCATCAAATGGATGAAAGGCGACCAACCACTGCAAGGTGAGGCGACTGTGGAGGAGTTATACGACAGGATGTTCACTGTCACCAGCCGGCTCAGGCTCACCGTCTCTAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCCGTGAAGGACTTCCAGGCCCAGAAATACCTGGAAGTGCAGTATAAACCAGAAGTGAAGATTGTGGTGGGATTCCCAGAGGGTTTGACCAGAGAAGGAGAAAATCTCGAGCTGACATGCAAAGCTAAAGGAAAACCGCAGCCTCATCAAATTAACTGGCTCAAAGTGGATGATGATTTCCCCTCCCACGCCTTGGTAACTGGCTCTGATCTCTTCATCGAAAACCTTAACAAGTCCTACAACGGAACGTACCGCTGTGTGGCATCTAACTTAGTGGGAGAAGCCTACGATGATTACATCCTTTATGTATACGATTCAAGAGCAGATGGAGCGCCACAGAAAATTGATCATGCCGTCATCGGCGGAGTTGTCGCAGTGGTTGTGTTCGCCATGCTTTGTCTCCTGATTGTTCTTGGCCGATATTTCGCCAGACACAAAGGGACCTACTTCACCCACGAAGCTAAAGGAGCGGATGACGCGGCGGACGCCGACACTGCCATCATCAACGCAGAGGGCGGACACAACAATTCGGATGACAAGAAGGAATACTACATTTAACTGGAACTAGACCTGTTAGCTTCCAGTGCTGAACAGCAAACTGTGGACTGCTGGGTTTGGGAGGAAGGGGTTGTGGGATTCAATCAGGCTGGATTCACACCTGCGCAGCTGAAGAGACGCTGCTGCCATCGAGACGGACGGGGTGTGGGATGGCAGAGCACTAGGAGAGCTCAATTTTAGACCGCTTCACCATCCAACACCTCCTGCTGGGGCCGGTTTTGTTCCGTTTAAACATTTGCTAAGAATTTTGTGCCTTGTTCTGTTCTTACTGAAGTTCCCACTTTCATCAGGACACCCACAAGCTACTGTCTCTCCAATGGTCTGAatccacgttttttttttctctcctttcatttcatttttttaattgctaGCACATCTTAAAGCTCTCTCTCATGCTGTTCTGTCTGCAGGTCTGAAAGAAAGCCGCGCACCAAGTTTCGATGTAAGATTCAGTCACAGAATGATCGCTTGGGTTGTTTTCACGGATTGATTCCAAGTAATTTATTTGGCAAATTGCCTGTTGCTCTCCTTAGTCCCCCAGAGAACGAGTTAGAGATGATAGAaacctttttttctctctcttttttgtgaCCAACAACATTCAGCAGCAGTATTGCATTGTTGCAATATTTATTGGATATACTGTATGTGATTATGATCAGCTTGTGTTgatattagggctgtcaatcgAACACATTACTACTATTATTTCgtttattaaatcattaaaatattaccCAAATTTGGCAATGACATgacaaaatttatattattattattattatatacagctATGGAGAAAATATTAAGACCAATTATGACATTTCttactaaattaaaatgaaaaagttattatttagagcattgttttttttttttttgcttgtttgttttttctttaaaaaaaaagtgctaaatTTTCAGACATGTTGCTAGCCAAATTCATTTATATAGAACATTTCATAAACAGTAATAATtccaagtgctttacataaacaggaataaaagaaacaagtataagaaaataaaaaacaaattataacagtgaataaaagcagtttaaaatgtgttaaacaggttttaaaagaatgaaaaagaaaagaaagacaaatTATAACagtgaataaaagcagtttaaaatgtgttaaacaggttttaaaagaatgaaaaagaaaagaaagacaaatTATAACagtgaataaaagcagtttaaaatg

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006707 cholesterol catabolic process biological_process
GO:0051234 establishment of localization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098657 import into cell biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0099094 ligand-gated cation channel activity molecular_function
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022835 transmitter-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0033781 cholesterol 24-hydroxylase activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-34 Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cleithrum; immature eye; and nervous system. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDART00000062603

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016860 lncRNA upstream 71017 18788416 ~ 18792858 (+) False XLOC_008423
TCONS_00018921 lncRNA upstream 71017 18790003 ~ 18792858 (+) False XLOC_008423
TCONS_00018920 lncRNA upstream 71017 18790003 ~ 18792858 (+) True XLOC_008423
TCONS_00018919 lncRNA upstream 73202 18789008 ~ 18790673 (+) False XLOC_008423
TCONS_00018918 lncRNA upstream 462667 18385590 ~ 18401208 (+) True XLOC_008422
TCONS_00018922 lncRNA downstream 167305 19155890 ~ 19157908 (+) True XLOC_008425
TCONS_00018768 lncRNA downstream 194263 19182848 ~ 19187834 (+) False XLOC_008426
TCONS_00018769 lncRNA downstream 194271 19182856 ~ 19187787 (+) True XLOC_008426
TCONS_00016863 lncRNA downstream 296257 19284842 ~ 19286143 (+) True XLOC_008427
TCONS_00016864 lncRNA downstream 299047 19287632 ~ 19291377 (+) True XLOC_008428
TCONS_00016858 mRNA upstream 707884 18130109 ~ 18155991 (+) False XLOC_008421
TCONS_00016853 mRNA upstream 1006997 17848590 ~ 17856878 (+) True XLOC_008418
TCONS_00016850 mRNA upstream 1106849 17752928 ~ 17757026 (+) False XLOC_008417
TCONS_00016852 mRNA upstream 1106853 17756113 ~ 17757022 (+) False XLOC_008417
TCONS_00016847 mRNA upstream 1116048 17730567 ~ 17747827 (+) False XLOC_008416
TCONS_00016865 mRNA downstream 305159 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA downstream 305258 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016867 mRNA downstream 311645 19300230 ~ 19320615 (+) False XLOC_008429
TCONS_00016868 mRNA downstream 311858 19300443 ~ 19313440 (+) True XLOC_008429
TCONS_00016869 mRNA downstream 336112 19324697 ~ 19331078 (+) False XLOC_008430
TCONS_00016857 other upstream 777059 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 1107108 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 1447268 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 1489960 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 1762207 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016870 other downstream 336142 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 347082 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 1001538 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 1367210 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 1540695 20529280 ~ 20535484 (+) False XLOC_008450

Expression Profile

//