RNA id: TU278052


Basic Information

Item Value
RNA id TU278052
length 280
lncRNA type intronic
GC content 0.51
exon number 2
gene id G244930
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2170362 ~ 2170733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTTTCAGCAGGATAATGCACCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCAAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCCCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTTGGTGCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATGCCTCGACGGGTCAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278049 lncRNA downstream 12242 2157913 ~ 2158120 (-) True G244928
TU278033 lncRNA downstream 22258 2122725 ~ 2148104 (-) True G244916
TU278042 lncRNA downstream 35113 2134674 ~ 2135249 (-) True G244922
TU278032 lncRNA downstream 56208 2113945 ~ 2114154 (-) True G244915
TU278031 lncRNA downstream 57698 2112352 ~ 2112664 (-) True G244914
TU278061 lncRNA upstream 38197 2208930 ~ 2209229 (-) True G244939
TU278088 lncRNA upstream 64082 2234815 ~ 2235090 (-) True G244963
TU278063 lncRNA upstream 76680 2247413 ~ 2247724 (-) True G244941
TU278071 lncRNA upstream 169398 2340131 ~ 2341614 (-) True G244949
TU278100 lncRNA upstream 177754 2348487 ~ 2348796 (-) True G244971
CI01000057_01904867_01921400.mRNA mRNA downstream 248457 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 363908 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 461913 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 597512 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 624332 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_02200951_02207673.mRNA mRNA upstream 29847 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 77613 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 87661 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 203816 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 231087 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277965 other downstream 248941 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 365209 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1599334 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1599448 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1721002 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2758011 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2758011 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3040377 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3752807 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile