RNA id: TU278063


Basic Information

Item Value
RNA id TU278063
length 312
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G244941
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2247413 ~ 2247724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAGGAAGCCTGACTGAAGCAGCTGATAATCAGGCTTTGGATGTTCCGGGGAGCACAACAGCCTCTTTCTGCCTGGATTTTAATCAGGTTTATTTTTAGTACAAGGACAGAAATCGACGATTTTATGAGCAGTGGCATCGGTCACGCTTGACAGTGACTGATGGAGCTGTATTTTTATACCGATCGCTGTATATTTTCGAGTTAACTGTTGGGCCGGAGGAGCTTTGTAACAATGAAGGCCTAGAATCCAGATCCGAGGGATTTAAAGCTCTCCTCTGTCCCAGACACAAGGATCAACAACACGCTCAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278088 lncRNA downstream 12323 2234815 ~ 2235090 (-) True G244963
TU278061 lncRNA downstream 38184 2208930 ~ 2209229 (-) True G244939
TU278052 lncRNA downstream 76680 2170362 ~ 2170733 (-) True G244930
TU278049 lncRNA downstream 89293 2157913 ~ 2158120 (-) True G244928
TU278033 lncRNA downstream 99309 2122725 ~ 2148104 (-) True G244916
TU278071 lncRNA upstream 92407 2340131 ~ 2341614 (-) True G244949
TU278100 lncRNA upstream 100763 2348487 ~ 2348796 (-) True G244971
TU278096 lncRNA upstream 112432 2360156 ~ 2360434 (-) True G244967
TU278112 lncRNA upstream 144491 2392215 ~ 2392503 (-) True G244979
TU278066 lncRNA upstream 145010 2392734 ~ 2396427 (-) True G244944
CI01000057_02200951_02207673.mRNA mRNA downstream 39740 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_01904867_01921400.mRNA mRNA downstream 325508 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 440959 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 538964 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 674563 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_02248495_02254279.mRNA mRNA upstream 622 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 10670 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 126825 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 154096 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
CI01000057_02421510_02433767.mRNA mRNA upstream 173500 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
TU277965 other downstream 325992 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 442260 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1676385 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1676499 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1644011 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2681020 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2681020 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2963386 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3675816 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile