RNA id: TCONS_00018768


Basic Information

Item Value
RNA id TCONS_00018768
length 837
lncRNA type intronic
GC content 0.38
exon number 6
gene id XLOC_008426
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19182848 ~ 19187834 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGACAGGATTTCATATTGAGAAGATGTACtgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaagaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcaggaagaaatgtgagatccaagttctacgctgcattggacacacactgctcgtttgattgaaataaaaaaaaaaaacaggagaaaattgcagaagaaaactagaagaaattttcaacatgttaattcaaaggtcatctggcagcagttctccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcttgctgactgtcgtgtgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactttgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaacgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcggcGAGTGCCTGTATACTGCTGTGCTTtgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacacttttttttttttttaccaaaaaagtgtattgtgatttatagggttgtcaaaagtattgagtttggtacc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018922 lncRNA upstream 24940 19155890 ~ 19157908 (+) True XLOC_008425
TCONS_00016861 lncRNA upstream 275125 18863872 ~ 18907723 (+) False XLOC_008424
TCONS_00016860 lncRNA upstream 389990 18788416 ~ 18792858 (+) False XLOC_008423
TCONS_00016863 lncRNA downstream 97008 19284842 ~ 19286143 (+) True XLOC_008427
TCONS_00016864 lncRNA downstream 99798 19287632 ~ 19291377 (+) True XLOC_008428
TCONS_00016871 lncRNA downstream 137224 19325058 ~ 19327754 (+) True XLOC_008430
TCONS_00018770 lncRNA downstream 284431 19472265 ~ 19482790 (+) False XLOC_008432
TCONS_00016881 lncRNA downstream 465026 19652860 ~ 19655026 (+) True XLOC_008433
TCONS_00016862 mRNA upstream 194263 18863875 ~ 18988585 (+) True XLOC_008424
TCONS_00016858 mRNA upstream 1026857 18130109 ~ 18155991 (+) False XLOC_008421
TCONS_00016853 mRNA upstream 1325970 17848590 ~ 17856878 (+) True XLOC_008418
TCONS_00016850 mRNA upstream 1425822 17752928 ~ 17757026 (+) False XLOC_008417
TCONS_00016865 mRNA downstream 105910 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA downstream 106009 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016867 mRNA downstream 112396 19300230 ~ 19320615 (+) False XLOC_008429
TCONS_00016868 mRNA downstream 112609 19300443 ~ 19313440 (+) True XLOC_008429
TCONS_00016869 mRNA downstream 136863 19324697 ~ 19331078 (+) False XLOC_008430
TCONS_00016857 other upstream 1096032 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 1426081 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 1766241 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 1808933 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 2081180 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016870 other downstream 136893 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 147833 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 802289 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 1167961 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 1341446 20529280 ~ 20535484 (+) False XLOC_008450

Expression Profile

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