RNA id: TU278100


Basic Information

Item Value
RNA id TU278100
length 310
lncRNA type intronic
GC content 0.40
exon number 1
gene id G244971
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2348487 ~ 2348796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCAGTCGCCAGTAAAATGATGGGAACACAGCACAAGGTTCGGGTTTCAAGTTTTCCCTGGCGTCCGCGTGCGCAATAAGTGGGCGGGCAATATGTTAATGTTTCGTTGTGACATCACAACGAAATGGCTTAAGATTCGCTTTACAAACGACTCGTTTAATTGATTCAGAGTCGACTCTTACTTTTGAGAGACAATAATTTTATGTACGGTGCACTTTCAGATTTAAAACTTTCCAGGATGTTTTCATTCACTTAGAGCTATGTTACACACTACATGTAAGGTAATTCTCAAAAATCCATAATAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278071 lncRNA downstream 6873 2340131 ~ 2341614 (-) True G244949
TU278063 lncRNA downstream 100763 2247413 ~ 2247724 (-) True G244941
TU278088 lncRNA downstream 113397 2234815 ~ 2235090 (-) True G244963
TU278061 lncRNA downstream 139258 2208930 ~ 2209229 (-) True G244939
TU278052 lncRNA downstream 177754 2170362 ~ 2170733 (-) True G244930
TU278096 lncRNA upstream 11360 2360156 ~ 2360434 (-) True G244967
TU278112 lncRNA upstream 43419 2392215 ~ 2392503 (-) True G244979
TU278066 lncRNA upstream 43938 2392734 ~ 2396427 (-) True G244944
TU278115 lncRNA upstream 65141 2413937 ~ 2414185 (-) True G244982
TU278149 lncRNA upstream 227657 2576453 ~ 2576889 (-) True G245015
CI01000057_02258394_02291730.mRNA mRNA downstream 56757 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02248495_02254279.mRNA mRNA downstream 94169 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02200951_02207673.mRNA mRNA downstream 140814 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_01904867_01921400.mRNA mRNA downstream 426582 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 542033 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_02374706_02384095.mRNA mRNA upstream 25753 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 53024 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
CI01000057_02421510_02433767.mRNA mRNA upstream 72428 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
CI01000057_02439034_02454810.mRNA mRNA upstream 88826 2437622 ~ 2454810 (-) True CI01000057_02439034_02454810
CI01000057_02457005_02470094.mRNA mRNA upstream 108017 2456813 ~ 2470094 (-) True CI01000057_02457005_02470094
TU277965 other downstream 427066 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 543334 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1777459 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1777573 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1542939 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2579948 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2579948 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2862314 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3574744 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile