RNA id: TU278066


Basic Information

Item Value
RNA id TU278066
length 3368
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G244944
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2392734 ~ 2396427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGATCTTTGTTTTGCATCGCTTCCCAATTTGCATTTGTTTCTCAGGTTTTCCATACGACGCTCCAGCCGCCGAAAAGCCCCGAGCGCGCAAAGGCGCATTCCTCCGCGAGCGTCCAGTCACATTTCGAGAATTCCAACGTTGGGAATTTTGGAATAGTTGAAGCGGGCGCGAGCTGAAAGAAGGAAATTACATGTATTCGCCCCGCGTCCCAGACATCCACTCGCGGAGACACGTGCGATAGAGGTAAACAGCCGAAAGATTCGCTCGACAAAATTCACCTCGCGCTATCGATTCAACTGAACATACAGTAGCCGCGGTTAGTTCATACAGCATGTCGGATGTATTACCGTATAACGAGGATAAAATGACTCATTATGGCAACGACGGGGACGAGGAACACCTTTCCTTCACCTGCCGCCTTCAAGACACCAACAACTTTTTCGGTGGCAACCCGAATAAACGACCACCAAAGCTCGGGCAGATCGGGAGAAGCAAAAGAGTCATTGAAGAAGAAAACGATGGCGAAGCACTGGACAAGAGCACAGAGAAATCCTCGTCGGCGTAAACGGACCCAAAGACTCTTAACCTCTCTGATGTGTTTATCCAAAGACATTGTGAAGAGGCTCTCTCTCCCATCTGGCGACAAGCACTCCACACATTCTCCTCTCCTTAACTCCATTGTCCAGGGTTTACAGTGTGACGGGGCAGCGGACTGAACCGGCGGTCCGGAAGAATGGCCCAGGGGGGCTTGAAGGAATACTGTGTTTTCCAAACTATACTCCGAGATATGTGCAATGACAGGGTTCGGTCTCATTAAAGAGACCGAGCTCTACTTCTTTCTTTCTTTCATTTTATTTTTTATTCTAATGAAGCAATTCGATAGACTGAGCAAATGGTACCATTAACATCAAACCAGTATCTTCCCGCTTAACCCAGTAGCCTACTGGTGGTGTTAATGGTATACTAGCAATGTCAACCTTTTCTTCCACAGTGGACCTCCAAAGAGGTTTCACTATGTATGTAAAAAAACAAAAAAAAAATGAGAAGCTATTTATTAAATCTTTGGATACATATTTTGCAGTGTTGAAGGTTGAGCAAACGTTTTATATAGTAGACCGACAACGAGAAGTGACTTTTGCTTTGGATAAATGTTTTGTATGTAGCTTAACTGTGATTCTCGTGATCTGCTTCGTTTCATTTCATTCACTTGTTCAATCTGGAATGTCAGTTTCAAGACAGTAACCTTATTATCGTAAAGTATATTTACTGTAGATGTGCCAAATTATCCTGAGAGAAACATATATTTCTGTGCTTTCTTCACGTGCACAGGTTTATTAATATTCGGTGGTCATGTTTACAGGGCTCTTTCATACTTGTGATGTATTCTAGTCATGCATGACGAACCTCAAGACCTTAAGAACGTCTTCTTGAATATAACGTATTTATCTCACAGAACATTTCTACAGAATATCTGTTATAATAAAGATTTTGAGAAACATTCAAAGAGACGCCTTTTTTTTTTTCTTCCTTGACACACTCTAATGCTCCGTTTAGCACGCTGAAATCTGTGCGTGTGCACAAATCCAGGGGACGTGACATTTCCGCCTCTGTCACAAGCTTTAAATGATTCATGGTTTGGGATTAGCATTGTCAAAGCGCACCATCTAAAAATCCAGTCCACTGAGATCAGGAGGAATCACGTGGCGTGTCAGAGCAAATATTATCTGCAAACTGTACGAGTGAGTTTCCCAGAGCTTCTCCTGCCAGTCTGGAGGTAACTTCGTTAAAAACACTGGCTGGATGGGCTGCCATGGCAACTGATTCACCTCCCCTGAAATTTCCATTGTGTCCACTAGGGAAACCACAGCAGAGGATCTGACAATGTGGATGAATATTACATCAGTCCACATGAATTTTTGGCTGCATTCATAAGTTGTATTGTATACTGTGGCACGAGAATTGTTGGTTTAACATAAAATAGTAAGTTACCTGGTTGCCTTAAAATGTTGAGTTCATTGAAATTAAAAAAATGAGTTAATACAATGAAGGCGATTGGTTTAATCAACAGAAACTCAAAATATTATGTTATCTGAACTACATTTGACAAAAGAAAATGTTATGATAACATAATTGTTTACAGTGTATGTTTGTACTAATGCACTTTTACCTATTCAGCACTATGCCAAAATGATAAACCACCCTAAAAAGGCATTCGAAGACACTCGTTCCAGTTGGAGATAAAGAGCCATTTCCTCAAAAGCAAACAGCAGTCTGAGGTTCTACTATGAATTGGTGTGTTCAGATTGTGACATCATCATGCGTTCAAAAAAAATGTCCCAAGCACCAGGGAACACCGTAGCATGAGGATCTCAGCCGAATAACGTTAGCTCACGTCAGAACGCATTATGTAATGCACAAGGGAGGTCGGCAGTGTGCGGTGGCACAGTCTGCTGGTGCTGTGTTTGGTAGAGACATGCAAATAATCTGGCTTCTGCTGCAATTTGCATTTGGCTTCTATGTTTTGCTTTTGATTCAACGGGGGCTCCGGCTTTGGGTTTCATAGGAGCGAAGACAATATGACTGCAGAGGGCTACATGATCAGAATAGGGAAATTTTGTGGTGGGATTGGAAATGAACTACGGAAGTTTTCCAAGACTCGGTTGCTGCAATTAGTCGAGTATGAAAATAACTATTTGGAATGTTTGTTTTGCTGACGTAGTTTGTTCTGAGGCTGAAACCGAATTTCTCATTTGTTTTCATGCTAATGGAAGTACTTTATTTACCTTTTTGTTGTCCGTTGCCGTGGTGCTGACCAGTGCTAATCAGTCAGTGTCTAACCACCAAAAAATCTTTACTACTTTAAACACTACAGTCAAAGTCCTCAAAATAAAATAATGAAATTAATAAATAATTTATTAAAACAATAATTTAATAAACCAACTCATTTGGAAATAATTAAATGAATAAATAATTAAATAAGTGAATAATTGCACATAATTTTACACACACACATAATTTATTTTGAAATATTACATAAAACCACAGTAAACATTTATATAATGTATATAATTAATATTCTCTATACTGCATTTATATAATATATACAGTATATATACTGTATATATTACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTGTATGTGTGTGTGTGGTACATATATATATATATATATATATATTGCATTTTTCATTGCATTTCATTTAAATTATTAAATTAAATAATGCATTTACATAATAAAATGTAATGTATAATTTTAGATTTTATATATAAAATAAAAAACACCGCTATTGTTTTAACCACCAAAAAAGTCATTACTTTAAACACTACAGTCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278112 lncRNA downstream 231 2392215 ~ 2392503 (-) True G244979
TU278096 lncRNA downstream 32300 2360156 ~ 2360434 (-) True G244967
TU278100 lncRNA downstream 43938 2348487 ~ 2348796 (-) True G244971
TU278071 lncRNA downstream 51120 2340131 ~ 2341614 (-) True G244949
TU278063 lncRNA downstream 145010 2247413 ~ 2247724 (-) True G244941
TU278115 lncRNA upstream 17510 2413937 ~ 2414185 (-) True G244982
TU278149 lncRNA upstream 180026 2576453 ~ 2576889 (-) True G245015
TU278150 lncRNA upstream 180569 2576996 ~ 2577232 (-) True G245016
TU278158 lncRNA upstream 199779 2596206 ~ 2596517 (-) True G245024
TU278169 lncRNA upstream 290432 2686859 ~ 2687100 (-) True G245034
CI01000057_02374706_02384095.mRNA mRNA downstream 7885 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02258394_02291730.mRNA mRNA downstream 101004 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02248495_02254279.mRNA mRNA downstream 138416 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02200951_02207673.mRNA mRNA downstream 185061 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_01904867_01921400.mRNA mRNA downstream 470829 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_02401903_02408835.mRNA mRNA upstream 5393 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
CI01000057_02421510_02433767.mRNA mRNA upstream 24797 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
CI01000057_02439034_02454810.mRNA mRNA upstream 41195 2437622 ~ 2454810 (-) True CI01000057_02439034_02454810
CI01000057_02457005_02470094.mRNA mRNA upstream 60386 2456813 ~ 2470094 (-) True CI01000057_02457005_02470094
CI01000057_02621058_02622618.mRNA mRNA upstream 224488 2620915 ~ 2622849 (-) True CI01000057_02621058_02622618
TU277965 other downstream 471313 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 587581 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1821706 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1821820 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1495308 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2532317 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2532317 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2814683 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3527113 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile