RNA id: TU278115


Basic Information

Item Value
RNA id TU278115
length 249
lncRNA type intronic
GC content 0.37
exon number 1
gene id G244982
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2413937 ~ 2414185 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTAATAGTAGTGTGTGTACATATATATATACGGTTAGTTCCTGTCCTTGATTCTGATTGGTCAATAGTTGTGTTTATTCACGATAAAACACGGCTATGACCGCTTCACCCAACGGATCTGTGTATCACTACACAATACCCTTATCAACCACTCTTAGCAACGTAAACTGTTTGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGAAAGAGATCGAGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278066 lncRNA downstream 17510 2392734 ~ 2396427 (-) True G244944
TU278112 lncRNA downstream 21434 2392215 ~ 2392503 (-) True G244979
TU278096 lncRNA downstream 53503 2360156 ~ 2360434 (-) True G244967
TU278100 lncRNA downstream 65141 2348487 ~ 2348796 (-) True G244971
TU278071 lncRNA downstream 72323 2340131 ~ 2341614 (-) True G244949
TU278149 lncRNA upstream 162268 2576453 ~ 2576889 (-) True G245015
TU278150 lncRNA upstream 162811 2576996 ~ 2577232 (-) True G245016
TU278158 lncRNA upstream 182021 2596206 ~ 2596517 (-) True G245024
TU278169 lncRNA upstream 272674 2686859 ~ 2687100 (-) True G245034
TU278170 lncRNA upstream 273465 2687650 ~ 2687865 (-) True G245035
CI01000057_02401903_02408835.mRNA mRNA downstream 2789 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
CI01000057_02374706_02384095.mRNA mRNA downstream 29088 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02258394_02291730.mRNA mRNA downstream 122207 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02248495_02254279.mRNA mRNA downstream 159619 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02200951_02207673.mRNA mRNA downstream 206264 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02421510_02433767.mRNA mRNA upstream 7039 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
CI01000057_02439034_02454810.mRNA mRNA upstream 23437 2437622 ~ 2454810 (-) True CI01000057_02439034_02454810
CI01000057_02457005_02470094.mRNA mRNA upstream 42628 2456813 ~ 2470094 (-) True CI01000057_02457005_02470094
CI01000057_02621058_02622618.mRNA mRNA upstream 206730 2620915 ~ 2622849 (-) True CI01000057_02621058_02622618
CI01000057_02624690_02627558.mRNA mRNA upstream 210276 2624461 ~ 2630222 (-) True CI01000057_02624690_02627558
TU277965 other downstream 492516 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 608784 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1842909 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1843023 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1477550 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2514559 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2514559 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2796925 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3509355 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile