RNA id: TU278149


Basic Information

Item Value
RNA id TU278149
length 437
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G245015
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2576453 ~ 2576889 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCTTCCAATCACATGCACCAATCACCAATTGCCACACACACCTGCAGATCATTACCTGGACTATTTAAGACACACACACACACACACCCTTTGCGAAGTCTTGATTTGCCCCGGTGATCATTACTAAGCGTTTTCTTGTGGACTGTTTCCTGGTTTCCGTTGGACTGTTTATTCTTTGTGATTCTCTGCTGCCTGCCCTGATCCTTGCCTGTACCCTGATTCTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTCCTTGTTTATGTTCCTGCCTTTGCCCCTGTCTACCTGTATAAATACTGTTCTTAATAAAAGCTTGCAAATGGATCCCCGCTCTGCCGACCCATCATTACAGAAGACTTCGCCATCAAACGATCCAGCAGCTTCTACGAGCGCTTCCAGCCTTAGCATGGACCCAGCAATACGTCTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278115 lncRNA downstream 162268 2413937 ~ 2414185 (-) True G244982
TU278066 lncRNA downstream 180026 2392734 ~ 2396427 (-) True G244944
TU278112 lncRNA downstream 183950 2392215 ~ 2392503 (-) True G244979
TU278096 lncRNA downstream 216019 2360156 ~ 2360434 (-) True G244967
TU278100 lncRNA downstream 227657 2348487 ~ 2348796 (-) True G244971
TU278150 lncRNA upstream 107 2576996 ~ 2577232 (-) True G245016
TU278158 lncRNA upstream 19317 2596206 ~ 2596517 (-) True G245024
TU278169 lncRNA upstream 109970 2686859 ~ 2687100 (-) True G245034
TU278170 lncRNA upstream 110761 2687650 ~ 2687865 (-) True G245035
TU278204 lncRNA upstream 259788 2841367 ~ 2841430 (-) False G245067
CI01000057_02457005_02470094.mRNA mRNA downstream 106359 2456813 ~ 2470094 (-) True CI01000057_02457005_02470094
CI01000057_02439034_02454810.mRNA mRNA downstream 121643 2437622 ~ 2454810 (-) True CI01000057_02439034_02454810
CI01000057_02421510_02433767.mRNA mRNA downstream 142686 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
CI01000057_02401903_02408835.mRNA mRNA downstream 165305 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
CI01000057_02374706_02384095.mRNA mRNA downstream 191604 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02621058_02622618.mRNA mRNA upstream 44026 2620915 ~ 2622849 (-) True CI01000057_02621058_02622618
CI01000057_02624690_02627558.mRNA mRNA upstream 47572 2624461 ~ 2630222 (-) True CI01000057_02624690_02627558
CI01000057_02656843_02688559.mRNA mRNA upstream 79954 2656843 ~ 2689532 (-) True CI01000057_02656843_02688559
CI01000057_02701515_02705729.mRNA mRNA upstream 123994 2700883 ~ 2705729 (-) True CI01000057_02701515_02705729
CI01000057_02710209_02720000.mRNA mRNA upstream 133275 2710164 ~ 2721575 (-) True CI01000057_02710209_02720000
TU277965 other downstream 655032 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 771300 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2005425 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2005539 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1314846 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2351855 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2351855 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2634221 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3346651 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile