RNA id: TU278170


Basic Information

Item Value
RNA id TU278170
length 216
lncRNA type intronic
GC content 0.43
exon number 1
gene id G245035
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2687650 ~ 2687865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATATTTGCATGCATCAAGGAGCCGCTTTTAAATGCGGGGTATTAAAATTGTGTTTGAATGAGCATTCGCGTTTTACTTTCACTTTCGTGATCATGAGTACTCTGTGAATAGGGAGCAGTGGTGCTGAGCTCGCATTTACAAGATAAGAAATACATTTATCAGACGCTTAGGCTTTGTTGTGCAGCGAATCCTCCGCCATGGTCTTGCCAGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278169 lncRNA downstream 550 2686859 ~ 2687100 (-) True G245034
TU278158 lncRNA downstream 91133 2596206 ~ 2596517 (-) True G245024
TU278150 lncRNA downstream 110418 2576996 ~ 2577232 (-) True G245016
TU278149 lncRNA downstream 110761 2576453 ~ 2576889 (-) True G245015
TU278115 lncRNA downstream 273465 2413937 ~ 2414185 (-) True G244982
TU278204 lncRNA upstream 148812 2841367 ~ 2841430 (-) False G245067
TU278205 lncRNA upstream 148812 2849172 ~ 2849372 (-) True G245067
TU278208 lncRNA upstream 162955 2850820 ~ 2869408 (-) True G245069
TU278269 lncRNA upstream 215200 2903065 ~ 2903273 (-) True G245130
TU279228 lncRNA upstream 303127 2990992 ~ 2991334 (-) True G245996
CI01000057_02624690_02627558.mRNA mRNA downstream 57428 2624461 ~ 2630222 (-) True CI01000057_02624690_02627558
CI01000057_02621058_02622618.mRNA mRNA downstream 64801 2620915 ~ 2622849 (-) True CI01000057_02621058_02622618
CI01000057_02457005_02470094.mRNA mRNA downstream 217556 2456813 ~ 2470094 (-) True CI01000057_02457005_02470094
CI01000057_02439034_02454810.mRNA mRNA downstream 232840 2437622 ~ 2454810 (-) True CI01000057_02439034_02454810
CI01000057_02421510_02433767.mRNA mRNA downstream 253883 2421224 ~ 2433767 (-) True CI01000057_02421510_02433767
CI01000057_02701515_02705729.mRNA mRNA upstream 13018 2700883 ~ 2705729 (-) True CI01000057_02701515_02705729
CI01000057_02710209_02720000.mRNA mRNA upstream 22299 2710164 ~ 2721575 (-) True CI01000057_02710209_02720000
CI01000057_02807951_02821617.mRNA mRNA upstream 119901 2807766 ~ 2821793 (-) True CI01000057_02807951_02821617
CI01000057_02829879_02834139.mRNA mRNA upstream 141969 2829834 ~ 2834262 (-) True CI01000057_02829879_02834139
CI01000057_02838008_02838430.mRNA mRNA upstream 148844 2836709 ~ 2838462 (-) False CI01000057_02838008_02838430
TU277965 other downstream 766229 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 882497 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2116622 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2116736 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1203870 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2240879 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2240879 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2523245 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3235675 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile