RNA id: TU278269


Basic Information

Item Value
RNA id TU278269
length 209
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G245130
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2903065 ~ 2903273 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCTGGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGGAACAGTGGTGAACCGGTGACAGGGTCATGGGTGGCCAGGGCTCACTGATGCATGTGGGGAGCGAAGGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278208 lncRNA downstream 33657 2850820 ~ 2869408 (-) True G245069
TU278205 lncRNA downstream 53693 2849172 ~ 2849372 (-) True G245067
TU278204 lncRNA downstream 61635 2841367 ~ 2841430 (-) False G245067
TU278170 lncRNA downstream 215200 2687650 ~ 2687865 (-) True G245035
TU278169 lncRNA downstream 215965 2686859 ~ 2687100 (-) True G245034
TU279228 lncRNA upstream 87719 2990992 ~ 2991334 (-) True G245996
TU279195 lncRNA upstream 109990 3013263 ~ 3322256 (-) True G245966
TU279366 lncRNA upstream 450159 3353432 ~ 3356706 (-) True G246132
TU279371 lncRNA upstream 458426 3361699 ~ 3397205 (-) True G246136
TU279205 lncRNA upstream 687519 3590792 ~ 3591597 (-) True G245973
CI01000057_02844117_02844398.mRNA mRNA downstream 56327 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_02838008_02838430.mRNA mRNA downstream 64603 2836709 ~ 2838462 (-) False CI01000057_02838008_02838430
CI01000057_02829879_02834139.mRNA mRNA downstream 68803 2829834 ~ 2834262 (-) True CI01000057_02829879_02834139
CI01000057_02807951_02821617.mRNA mRNA downstream 81272 2807766 ~ 2821793 (-) True CI01000057_02807951_02821617
CI01000057_02710209_02720000.mRNA mRNA downstream 181490 2710164 ~ 2721575 (-) True CI01000057_02710209_02720000
CI01000057_03027103_03027612.mRNA mRNA upstream 123807 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_03192667_03213688.mRNA mRNA upstream 289229 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03345268_03367172.mRNA mRNA upstream 441473 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03428989_03429249.mRNA mRNA upstream 525399 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
CI01000057_03629306_03634635.mRNA mRNA upstream 725653 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
TU277965 other downstream 981644 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1097912 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2332037 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2332151 570530 ~ 570914 (-) False G244358
TU279491 other upstream 988462 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2025471 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2025471 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2307837 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3020267 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile