RNA id: TU279195


Basic Information

Item Value
RNA id TU279195
length 392
lncRNA type read_through
GC content 0.49
exon number 6
gene id G245966
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3013263 ~ 3322256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGCCTCATCGACACGGAAGGCTCTCTTCTCTCATTAATTACATGAGCTGGGTGCTCAGGGAAAGTTCAGAGTGAAGATGTTCTAGTGTGTCCTCTTCGTGTTGTTGAGCGGTTTCGGGATCTTCGTCCTGAAGAGGTGGCAGATCTATTCATGACCACACAGAGAGTAGCCAATGGAATTGAGAAACACTTCCAGGCATCTTCCCTAACCATCGCCATACAGGACGGACCTGAGGCAGGACAGACGGTGAAGCTCCAGAAACATGACCGGGAAAGTGAGGATCTTCCTTCCAAATGGAGATCAGAAGAGGAGATGGCCAGAGAGGCGACAGAATTAAGCAGCCTCTTCAACTAGCTTCTTAGAGGTGGAAGACAAGCAGATGGAGGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279228 lncRNA downstream 21929 2990992 ~ 2991334 (-) True G245996
TU278269 lncRNA downstream 109990 2903065 ~ 2903273 (-) True G245130
TU278208 lncRNA downstream 143855 2850820 ~ 2869408 (-) True G245069
TU278205 lncRNA downstream 163891 2849172 ~ 2849372 (-) True G245067
TU278204 lncRNA downstream 171833 2841367 ~ 2841430 (-) False G245067
TU279366 lncRNA upstream 31176 3353432 ~ 3356706 (-) True G246132
TU279371 lncRNA upstream 39443 3361699 ~ 3397205 (-) True G246136
TU279205 lncRNA upstream 268536 3590792 ~ 3591597 (-) True G245973
TU279483 lncRNA upstream 273089 3595345 ~ 3595637 (-) True G246248
TU279197 lncRNA upstream 278347 3600603 ~ 3603196 (-) True G245967
CI01000057_02844117_02844398.mRNA mRNA downstream 166525 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_02838008_02838430.mRNA mRNA downstream 174801 2836709 ~ 2838462 (-) False CI01000057_02838008_02838430
CI01000057_02829879_02834139.mRNA mRNA downstream 179001 2829834 ~ 2834262 (-) True CI01000057_02829879_02834139
CI01000057_02807951_02821617.mRNA mRNA downstream 191470 2807766 ~ 2821793 (-) True CI01000057_02807951_02821617
CI01000057_02710209_02720000.mRNA mRNA downstream 291688 2710164 ~ 2721575 (-) True CI01000057_02710209_02720000
CI01000057_03345268_03367172.mRNA mRNA upstream 22490 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03428989_03429249.mRNA mRNA upstream 106416 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
CI01000057_03629306_03634635.mRNA mRNA upstream 306670 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03847471_03851892.mRNA mRNA upstream 525049 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03887278_03892054.mRNA mRNA upstream 564947 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
TU277965 other downstream 1091842 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1208110 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2442235 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2442349 570530 ~ 570914 (-) False G244358
TU279491 other upstream 569479 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 1606488 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 1606488 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1888854 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 2601284 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile