RNA id: TU279205


Basic Information

Item Value
RNA id TU279205
length 706
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G245973
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3590792 ~ 3591597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGCTTCATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTTTCTGAGCATTGAAAAAGGAAATTAACTTGCTGGCAATGGAGGCCTCACTGAGCCATCGGATTTCATCATAAATATCTTAATTTGTGTTCTGAAGATGAGCAAAGGTCTTACGGGTGTGGAACGACATGAGCGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAATTGCATATTTGGAGAGGCTGGAAATACATGGTCAGGGAAAGGTCAAAAAAAAAAAAATTTGTTAATGTGTTTCGAAAAATGTCTATTTTCATTAGTAATAAAAGTTGGCATCAGCTATTCATCGCTAAAGTCATTTCTAACACATAAGTAGTAAATAATGGCACCCATTTTATTGAATGATCCATTTTCAGTGTACAGCATGAGAATGTGCACGAGAGAGGGAGGTGAGATGAAAACTGTTTACCTTCTTTACTTTGGTGTTTCTGATAGTGAAGATGCGGAGTGTGTAGCACGCCATTACTTTGGTTCTCTTTAGCGTCACCACAATATTACCATATTCCTCATTGTTCTCTGTCGGCCAGTACTGGTCGCATTTTCTTCTGCCTTTCTCCACCAGGTTAGTGATCATGACTATAATGCCGGTGTTCTGTTCCCACACCATCCTCCAGAAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279371 lncRNA downstream 193587 3361699 ~ 3397205 (-) True G246136
TU279366 lncRNA downstream 234086 3353432 ~ 3356706 (-) True G246132
TU279195 lncRNA downstream 268536 3013263 ~ 3322256 (-) True G245966
TU279228 lncRNA downstream 599458 2990992 ~ 2991334 (-) True G245996
TU278269 lncRNA downstream 687519 2903065 ~ 2903273 (-) True G245130
TU279483 lncRNA upstream 3748 3595345 ~ 3595637 (-) True G246248
TU279197 lncRNA upstream 9006 3600603 ~ 3603196 (-) True G245967
TU279485 lncRNA upstream 12853 3604450 ~ 3604680 (-) True G246250
TU279486 lncRNA upstream 14021 3605618 ~ 3605857 (-) True G246251
TU279533 lncRNA upstream 24585 3616182 ~ 3616793 (-) True G246298
CI01000057_03428989_03429249.mRNA mRNA downstream 160418 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
CI01000057_03345268_03367172.mRNA mRNA downstream 222782 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03192667_03213688.mRNA mRNA downstream 376923 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03027103_03027612.mRNA mRNA downstream 562941 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_02844117_02844398.mRNA mRNA downstream 744054 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_03629306_03634635.mRNA mRNA upstream 37329 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03847471_03851892.mRNA mRNA upstream 255708 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03887278_03892054.mRNA mRNA upstream 295606 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
CI01000057_03903266_03927695.mRNA mRNA upstream 310552 3902149 ~ 3927695 (-) True CI01000057_03903266_03927695
CI01000057_03964894_03967760.mRNA mRNA upstream 372858 3964455 ~ 3968737 (-) True CI01000057_03964894_03967760
TU277965 other downstream 1669371 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1785639 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3019764 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3019878 570530 ~ 570914 (-) False G244358
TU279491 other upstream 300138 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 1337147 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 1337147 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1619513 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 2331943 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile