RNA id: TU279513


Basic Information

Item Value
RNA id TU279513
length 700
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G246278
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3815644 ~ 3816343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTATGTTAACAGCTGAAGATCTCAATTTTGAAAAAATCAAACATTGAAAAATCTGATGCTTGACAATTATAAAATGTAAACGTTGAGAGTACATTTTGCAAACTCTGAAACAACAAAACTCATCAACATGAACTTTCTCTTTTAAACAGGGCAATAACGTACTGAACAACAAAAAAACAGACACACCCAAACTGAAGCGCCAGAATTACCATTACATTACAACATATAAAAAAAGGCAAATAACTTCAGTTAAAAAAGAAAAATTCAATTTCATCTGTTAACTGCATTTTGTTTTGAATATGTGTTGAGGTCCTTTTTTTTGTCATTATCCGGGTTTTCAGTATTCAGACTGAGAGAGGTACAGTTGTTGTGTGATGATTTTCTAGGTTATAGAGTATTTTCAATCCATAATATTCTGGCCAAAACAGCACTTATGTGACATTCTTTGGTTCCCCTTTCCCCCAGTTACATATCAATAGATAGATTAAATGGGTTAGGATTGTCTTTGTCCTTCACCCCTAATAGAAGCAGTCAAGAGGTCGACACGCAATTCAAACGTTTTAAAAACGCACAAGTGGAAATACACAGACTGGTGCATCAGTGGTACGTTCAGCACCGTAACCAAAAGCTGGTCTCTCCGAGGAGCAATTTCAGATTCAAACTAAGCAAGCCAAAACTCAAAAGCACTCACATAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279530 lncRNA downstream 84 3814101 ~ 3815560 (-) True G246295
TU279614 lncRNA downstream 50942 3764262 ~ 3764702 (-) True G246363
TU279586 lncRNA downstream 90920 3719901 ~ 3724724 (-) True G246342
TU279585 lncRNA downstream 93820 3718082 ~ 3721824 (-) True G246341
TU279581 lncRNA downstream 114260 3699714 ~ 3701384 (-) True G246337
TU279520 lncRNA upstream 73452 3889795 ~ 3890261 (-) False CI01000057_03887278_03892054
TU279660 lncRNA upstream 175218 3991561 ~ 3991876 (-) True G246407
TU279685 lncRNA upstream 245280 4061623 ~ 4140129 (-) True G246429
TU279514 lncRNA upstream 378681 4195024 ~ 4195559 (-) True G246279
TU279516 lncRNA upstream 391620 4207963 ~ 4208933 (-) True G246281
CI01000057_03629306_03634635.mRNA mRNA downstream 181009 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03428989_03429249.mRNA mRNA downstream 385270 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
CI01000057_03345268_03367172.mRNA mRNA downstream 447634 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03192667_03213688.mRNA mRNA downstream 601775 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03027103_03027612.mRNA mRNA downstream 787793 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_03847471_03851892.mRNA mRNA upstream 30962 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03887278_03892054.mRNA mRNA upstream 70860 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
CI01000057_03903266_03927695.mRNA mRNA upstream 85806 3902149 ~ 3927695 (-) True CI01000057_03903266_03927695
CI01000057_03964894_03967760.mRNA mRNA upstream 148112 3964455 ~ 3968737 (-) True CI01000057_03964894_03967760
CI01000057_03995084_03999126.mRNA mRNA upstream 177547 3993890 ~ 3999163 (-) True CI01000057_03995084_03999126
TU277965 other downstream 1894223 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2010491 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3244616 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3244730 570530 ~ 570914 (-) False G244358
TU279491 other upstream 75392 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 1112401 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 1112401 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1394767 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 2107197 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile