RNA id: TU279660


Basic Information

Item Value
RNA id TU279660
length 316
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G246407
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3991561 ~ 3991876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTAAGGCTGTGCGCGGAGACTCCAATGTATCCTATCTAGCAATGATACAGTATGTTATTGGAAGGGTTAGTTCACCCAAACACTATCAAGATCCAAAAAAGCACTATAAAAGTGGTCAGCATGTCCATATGAACAAGCCATACAATAGCTGTATGTGAACAGACCAAAGTTTAAGCCACTATTGTTTAAAAGTCTCTGCTGATAGAAAATATCACTTTGGGCATTTTGCTAAATATCTCCATTTCAGTTCCATTAACGAGTTTGGAAGGAGTGTGAGTAGATGATTTCATTCATTTCTCCACCCTTTAATAGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279520 lncRNA downstream 101300 3889795 ~ 3890261 (-) False CI01000057_03887278_03892054
TU279513 lncRNA downstream 175218 3815644 ~ 3816343 (-) True G246278
TU279530 lncRNA downstream 176001 3814101 ~ 3815560 (-) True G246295
TU279614 lncRNA downstream 226859 3764262 ~ 3764702 (-) True G246363
TU279586 lncRNA downstream 266837 3719901 ~ 3724724 (-) True G246342
TU279685 lncRNA upstream 69747 4061623 ~ 4140129 (-) True G246429
TU279514 lncRNA upstream 203148 4195024 ~ 4195559 (-) True G246279
TU279516 lncRNA upstream 216087 4207963 ~ 4208933 (-) True G246281
TU279730 lncRNA upstream 217481 4209357 ~ 4209730 (-) True G246474
TU279744 lncRNA upstream 255648 4247524 ~ 4247797 (-) True G246488
CI01000057_03964894_03967760.mRNA mRNA downstream 22824 3964455 ~ 3968737 (-) True CI01000057_03964894_03967760
CI01000057_03903266_03927695.mRNA mRNA downstream 63866 3902149 ~ 3927695 (-) True CI01000057_03903266_03927695
CI01000057_03887278_03892054.mRNA mRNA downstream 99507 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
CI01000057_03847471_03851892.mRNA mRNA downstream 139440 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03629306_03634635.mRNA mRNA downstream 356926 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03995084_03999126.mRNA mRNA upstream 2014 3993890 ~ 3999163 (-) True CI01000057_03995084_03999126
CI01000057_04042903_04046286.mRNA mRNA upstream 50894 4042770 ~ 4046320 (-) True CI01000057_04042903_04046286
CI01000057_04055321_04058726.mRNA mRNA upstream 63415 4055291 ~ 4059069 (-) True CI01000057_04055321_04058726
CI01000057_04145896_04146600.mRNA mRNA upstream 153388 4145264 ~ 4146790 (-) True CI01000057_04145896_04146600
CI01000057_04195849_04198909.mRNA mRNA upstream 203919 4195795 ~ 4198909 (-) True CI01000057_04195849_04198909
TU279491 other downstream 93870 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 2070140 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2186408 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3420533 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3420647 570530 ~ 570914 (-) False G244358
TU279998 other upstream 936868 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 936868 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1219234 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 1931664 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile