RNA id: TU279730


Basic Information

Item Value
RNA id TU279730
length 374
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G246474
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4209357 ~ 4209730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGTCATAACCACTTTCAAGGTCCAGAAAGGTAGTAAAGACATCATTAAAATAGTCCATGTGACTGCAGTGGTTCAACCTTAATGTTATGAAGCAATGAATACTTTGTGTGCAAAAACAAAAATAACTTTATTCAACAATTTATTTATTTTTTTCTCTTCCCTGTTTAGTCTCCGATGCTGGTTACGTTATAGACAGCGCAGTGCTTCCACGTTCTACATCATGACGCATGCGTGCGATGCTGGAGCCGGCCAATAATGAGTCGGCGTTCTGACGTAGAACCTGGAAGCTCTGCACTGTGTTTACAGCGTCTTTTACAATGTCTATAGGGAGGTCAGAAAGCTCTGATTTCATCAAAAATATCTTAATTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279516 lncRNA downstream 424 4207963 ~ 4208933 (-) True G246281
TU279514 lncRNA downstream 13798 4195024 ~ 4195559 (-) True G246279
TU279685 lncRNA downstream 69228 4061623 ~ 4140129 (-) True G246429
TU279660 lncRNA downstream 217481 3991561 ~ 3991876 (-) True G246407
TU279520 lncRNA downstream 319096 3889795 ~ 3890261 (-) False CI01000057_03887278_03892054
TU279744 lncRNA upstream 37794 4247524 ~ 4247797 (-) True G246488
TU279753 lncRNA upstream 52144 4261874 ~ 4262549 (-) True G246497
TU279527 lncRNA upstream 67669 4277399 ~ 4278950 (-) True G246292
TU279524 lncRNA upstream 70848 4280578 ~ 4283109 (-) True G246289
TU279775 lncRNA upstream 134480 4344210 ~ 4345741 (-) True G246519
CI01000057_04195849_04198909.mRNA mRNA downstream 10448 4195795 ~ 4198909 (-) True CI01000057_04195849_04198909
CI01000057_04145896_04146600.mRNA mRNA downstream 62567 4145264 ~ 4146790 (-) True CI01000057_04145896_04146600
CI01000057_04055321_04058726.mRNA mRNA downstream 150288 4055291 ~ 4059069 (-) True CI01000057_04055321_04058726
CI01000057_04042903_04046286.mRNA mRNA downstream 163037 4042770 ~ 4046320 (-) True CI01000057_04042903_04046286
CI01000057_03995084_03999126.mRNA mRNA downstream 210194 3993890 ~ 3999163 (-) True CI01000057_03995084_03999126
CI01000057_04210090_04214161.mRNA mRNA upstream 186 4209916 ~ 4214161 (-) True CI01000057_04210090_04214161
CI01000057_04455612_04467173.mRNA mRNA upstream 245304 4455034 ~ 4467217 (-) True CI01000057_04455612_04467173
CI01000057_04467496_04467864.mRNA mRNA upstream 257743 4467473 ~ 4468001 (-) True CI01000057_04467496_04467864
CI01000057_04512368_04525620.mRNA mRNA upstream 302147 4511877 ~ 4525620 (-) True CI01000057_04512368_04525620
CI01000057_04543887_04545600.mRNA mRNA upstream 333141 4542871 ~ 4546001 (-) True CI01000057_04543887_04545600
TU279491 other downstream 311666 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 2287936 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2404204 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3638329 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3638443 570530 ~ 570914 (-) False G244358
TU279998 other upstream 719014 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 719014 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1001380 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 1713810 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile