RNA id: TU279828


Basic Information

Item Value
RNA id TU279828
length 892
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G246559
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4419322 ~ 4420272 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGTCTCACCTTGCCTAGAAAGTACTGATGATTCCAAGTTAAGTGCTGTCCAAGTTTCATATATCATCAATATACTCACTTGCATTATCTGTCCTCCGACACAAACCTTTCAATAAAACCCTGTTGTTGTTTCCTCCTTGTTTCCACCTCCACTATGTGTGTGTTATACGTACTTTATTGATTAATTGACATTTTTACTGAAAGGTTAATTTCTTAATTCTGCACTCCCAATCCCATCTTACATTTTTGTGTTACAAGCATTTCTTGTTTTACTTGTAAATACATAGGTTGTGAATAATATTTCACACTGGGTTTATATTTACACTATTACAACATCTATGAAGTATTAATTAAACAAGAAATCACACTGAACAGAAAATGAGTTGAGCCAGTCCATTGACAGAGTACTATGACATATTTTGCTTTAGTATGTGATAAAAGCTCACAGCTCGCTGGCAGTTGAGGAGTTTCTGGACATCGTCTTGGGTGAGATGTCGAAATCCGAGTCCGAGCGGTAAAGAAAAGACTCTCGCCTCTGGCTGTTTGCTTGGAGGACCAGACCCGAGCTTGGACTGGGGTCCAGTGGACTGCGCCCGATTGACAATCCATTTTCCACATCGAAACTGCAACAGACAAACAGGAAATTAGGGTGACAGGAAATTAGTTATCTGAATAAAACAATTTGACAACTAAAAAGAAGAAACTGCTCATCATTTGATTCAAGGAATTCTAAGAATTGCAACATAGATATAGATTAGATGCTTTCGTTTCAGAACAGACACTGCCATTCTTGCAACTCAGTTAAAACAGCAAGCACAAGTGTTATTTTTTCTATCTGTGATGAAGACAGAAAGAGCACAAGTTTATGTTATCAATGACACGATTTGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279775 lncRNA downstream 73581 4344210 ~ 4345741 (-) True G246519
TU279524 lncRNA downstream 136213 4280578 ~ 4283109 (-) True G246289
TU279527 lncRNA downstream 140372 4277399 ~ 4278950 (-) True G246292
TU279753 lncRNA downstream 156773 4261874 ~ 4262549 (-) True G246497
TU279744 lncRNA downstream 171525 4247524 ~ 4247797 (-) True G246488
TU279842 lncRNA upstream 4708 4424980 ~ 4426373 (-) True G246573
TU279867 lncRNA upstream 14541 4434813 ~ 4443814 (-) True G246595
TU279860 lncRNA upstream 29730 4450002 ~ 4460264 (-) True G246588
TU279881 lncRNA upstream 64637 4484909 ~ 4485182 (-) True G246609
TU279884 lncRNA upstream 67040 4487312 ~ 4497669 (-) True G246611
CI01000057_04210090_04214161.mRNA mRNA downstream 205161 4209916 ~ 4214161 (-) True CI01000057_04210090_04214161
CI01000057_04195849_04198909.mRNA mRNA downstream 220413 4195795 ~ 4198909 (-) True CI01000057_04195849_04198909
CI01000057_04145896_04146600.mRNA mRNA downstream 272532 4145264 ~ 4146790 (-) True CI01000057_04145896_04146600
CI01000057_04055321_04058726.mRNA mRNA downstream 360253 4055291 ~ 4059069 (-) True CI01000057_04055321_04058726
CI01000057_04042903_04046286.mRNA mRNA downstream 373002 4042770 ~ 4046320 (-) True CI01000057_04042903_04046286
CI01000057_04455612_04467173.mRNA mRNA upstream 34762 4455034 ~ 4467217 (-) True CI01000057_04455612_04467173
CI01000057_04467496_04467864.mRNA mRNA upstream 47201 4467473 ~ 4468001 (-) True CI01000057_04467496_04467864
CI01000057_04512368_04525620.mRNA mRNA upstream 91605 4511877 ~ 4525620 (-) True CI01000057_04512368_04525620
CI01000057_04543887_04545600.mRNA mRNA upstream 122599 4542871 ~ 4546001 (-) True CI01000057_04543887_04545600
CI01000057_04560576_04573644.mRNA mRNA upstream 139368 4559640 ~ 4573644 (-) True CI01000057_04560576_04573644
TU279491 other downstream 521631 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 2497901 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2614169 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3848294 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3848408 570530 ~ 570914 (-) False G244358
TU279998 other upstream 508472 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 508472 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 790838 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 1503268 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile