RNA id: TCONS_00018770


Basic Information

Item Value
RNA id TCONS_00018770
length 555
lncRNA type sense_over
GC content 0.52
exon number 2
gene id XLOC_008432
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19456112 ~ 19602329 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACGAACAGCTCGTGAACTCACTGTACGACATTCAGCGCTTCAGAGGACGGACAATACGGTCAGATGAGTGACGGAGGGAGTGAACAAACTAGTGAGAGCTCGGAGTCCTGCAGCTCCGCGCGCCTCTCAGCAGACATCACTCACACTTTATCGTAATGCGCGGCTGTGGATTTCTCCAAGAGAGCGGCTGAAGTGCTTTTCAgctctcatttttatttcatgagTTCAAATTGTTTCGCCTGACATGCTCCAATGAGAATATCTTTTGGCTGAAACTATAATCTATTCTTATGCCGTAAAGAAGAGCGCAAGTCTTGTTGGAAGCCGGACAAATGGCTTCTGTTGTCCCGTCCACGTTTGGAGGATTCTCCCCCCAGGATAGTGGAGGATCCCTCTGATCTGATCGTGTCAAAGGGTGAGCCGGCCACTCTGAACTGCAAGGCGGAGGGTCGACCCGCTCCCACTGTGCAGTGGTATAAAGATGGCGAGCACGTTGAAACTGATAAAGACGACCCTCGCTCTCACCGCATGCTGCTGCCCAGCGGCTCACTA

Function

GO:

id name namespace
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016871 lncRNA upstream 144511 19325058 ~ 19327754 (+) True XLOC_008430
TCONS_00016864 lncRNA upstream 180888 19287632 ~ 19291377 (+) True XLOC_008428
TCONS_00016863 lncRNA upstream 186122 19284842 ~ 19286143 (+) True XLOC_008427
TCONS_00018768 lncRNA upstream 284431 19182848 ~ 19187834 (+) False XLOC_008426
TCONS_00018769 lncRNA upstream 284478 19182856 ~ 19187787 (+) True XLOC_008426
TCONS_00016881 lncRNA downstream 170070 19652860 ~ 19655026 (+) True XLOC_008433
TCONS_00016884 lncRNA downstream 206085 19688875 ~ 19708496 (+) False XLOC_008435
TCONS_00018923 lncRNA downstream 206085 19688875 ~ 19708850 (+) False XLOC_008435
TCONS_00018924 lncRNA downstream 206197 19688987 ~ 19721754 (+) False XLOC_008435
TCONS_00018771 lncRNA downstream 217626 19700416 ~ 19708496 (+) True XLOC_008435
TCONS_00016872 mRNA upstream 123882 19335646 ~ 19348383 (+) False XLOC_008431
TCONS_00016869 mRNA upstream 141187 19324697 ~ 19331078 (+) False XLOC_008430
TCONS_00016865 mRNA upstream 151650 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016867 mRNA upstream 151650 19300230 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA upstream 154965 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016877 mRNA downstream 61262 19544052 ~ 19602329 (+) True XLOC_008432
TCONS_00016878 mRNA downstream 164112 19646902 ~ 19660757 (+) False XLOC_008433
TCONS_00016879 mRNA downstream 170017 19652807 ~ 19659578 (+) False XLOC_008433
TCONS_00016880 mRNA downstream 170020 19652810 ~ 19659578 (+) False XLOC_008433
TCONS_00016882 mRNA downstream 198928 19681718 ~ 19686445 (+) False XLOC_008434
TCONS_00016873 other upstream 132261 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 142322 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016857 other upstream 1385449 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 1715498 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 2055658 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016899 other downstream 507333 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 873005 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 1046490 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016934 other downstream 1684352 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 1697304 21180094 ~ 21198286 (+) True XLOC_008459

Expression Profile

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