RNA id: TU280035


Basic Information

Item Value
RNA id TU280035
length 355
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G246750
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4945398 ~ 4945752 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACATTCAGGTCTGTGTTCTGATCCAGAGAGAGCTGTTGTCATGTATAGATATAAAACAGCTTCACAAACAGTTTTTCCAACCAATCGAGTTCTCTTCCACGCTTGAACGAATCATAACACACACAAATTATGCCAAAATGTCTGTTTTGTCGAGTGTCCTCATAAGAGCAGTCTTAAATGAGTTAAATCAAGTCTTAAATGAACGTAAAGATTTGTGAGAAAATGGGACGCGTGTCAGATCCACGTCATGTGCAGCGGCAGATCTTAAAGTGTCATTAATGAAAGAACAAAATTAAGAGAGAGAATTACTCACTGCTGGGGTCGCAAGGGGCGGAAAGTTTCCGGTAAATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279959 lncRNA downstream 8226 4936951 ~ 4937172 (-) False G246682
TU279960 lncRNA downstream 8238 4936951 ~ 4937160 (-) True G246682
TU279958 lncRNA downstream 26688 4913188 ~ 4918710 (-) True G246681
TU279982 lncRNA downstream 82216 4862804 ~ 4863182 (-) True G246703
TU279970 lncRNA downstream 141019 4801672 ~ 4804379 (-) True G246691
TU280036 lncRNA upstream 635 4946387 ~ 4946622 (-) True G246751
TU280040 lncRNA upstream 3801 4949553 ~ 4952336 (-) True G246753
TU280051 lncRNA upstream 17589 4963341 ~ 4963540 (-) True G246763
TU280052 lncRNA upstream 23281 4969033 ~ 4969962 (-) True G246764
TU280100 lncRNA upstream 117636 5063388 ~ 5090747 (-) False G246793
CI01000057_04927533_04931127.mRNA mRNA downstream 14271 4927533 ~ 4931127 (-) False CI01000057_04927533_04931127
CI01000057_04916382_04926437.mRNA mRNA downstream 18961 4916382 ~ 4926437 (-) False CI01000057_04916382_04926437
CI01000057_04891502_04906844.mRNA mRNA downstream 38554 4890235 ~ 4906844 (-) True CI01000057_04891502_04906844
CI01000057_04866089_04878847.mRNA mRNA downstream 66551 4866089 ~ 4878847 (-) True CI01000057_04866089_04878847
CI01000057_04861618_04865902.mRNA mRNA downstream 79496 4861618 ~ 4865902 (-) True CI01000057_04861618_04865902
CI01000057_05163258_05169859.mRNA mRNA upstream 216888 5162640 ~ 5170119 (-) True CI01000057_05163258_05169859
CI01000057_05442832_05459768.mRNA mRNA upstream 497032 5442784 ~ 5459768 (-) True CI01000057_05442832_05459768
CI01000057_05464070_05466835.mRNA mRNA upstream 518288 5464040 ~ 5469344 (-) True CI01000057_05464070_05466835
CI01000057_05486207_05495209.mRNA mRNA upstream 540288 5486040 ~ 5495657 (-) True CI01000057_05486207_05495209
CI01000057_05553430_05562372.mRNA mRNA upstream 605806 5551558 ~ 5562448 (-) True CI01000057_05553430_05562372
TU279999 other downstream 13978 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 14255 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 1047707 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 3023977 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 3140245 1805098 ~ 1805153 (-) True G244797
TU280085 other upstream 265358 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 977788 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile