RNA id: TU280040


Basic Information

Item Value
RNA id TU280040
length 249
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G246753
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4949553 ~ 4952336 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCTGCACTGCTTGTTGTACTCCTCTATCCCCATCTTCGCCACATCCTCAGGTCCTTTGATATTCAGAGATTTATCAATCTCATATTCCACAGGCAGGCCGTGACAGTCCCAGCCGAAGCGCCGGTCCACGTGGAAGCCGTTCTGATGGGCAAACCTGGTCACAATGTCCTTGATGGTTCCGGCCAGGATGTGGCCATAGTGAGGCAGACCGGTGGCAAAGGGCGGCCCGTCATAGAACGTGAACCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280036 lncRNA downstream 2931 4946387 ~ 4946622 (-) True G246751
TU280035 lncRNA downstream 3801 4945398 ~ 4945752 (-) True G246750
TU279959 lncRNA downstream 12381 4936951 ~ 4937172 (-) False G246682
TU279960 lncRNA downstream 12393 4936951 ~ 4937160 (-) True G246682
TU279958 lncRNA downstream 30843 4913188 ~ 4918710 (-) True G246681
TU280051 lncRNA upstream 11005 4963341 ~ 4963540 (-) True G246763
TU280052 lncRNA upstream 16697 4969033 ~ 4969962 (-) True G246764
TU280100 lncRNA upstream 111052 5063388 ~ 5090747 (-) False G246793
TU280087 lncRNA upstream 128933 5081269 ~ 5083402 (-) True G246782
TU280081 lncRNA upstream 133976 5086312 ~ 5172849 (-) False G246780
CI01000057_04927533_04931127.mRNA mRNA downstream 18426 4927533 ~ 4931127 (-) False CI01000057_04927533_04931127
CI01000057_04916382_04926437.mRNA mRNA downstream 23116 4916382 ~ 4926437 (-) False CI01000057_04916382_04926437
CI01000057_04891502_04906844.mRNA mRNA downstream 42709 4890235 ~ 4906844 (-) True CI01000057_04891502_04906844
CI01000057_04866089_04878847.mRNA mRNA downstream 70706 4866089 ~ 4878847 (-) True CI01000057_04866089_04878847
CI01000057_04861618_04865902.mRNA mRNA downstream 83651 4861618 ~ 4865902 (-) True CI01000057_04861618_04865902
CI01000057_05163258_05169859.mRNA mRNA upstream 210304 5162640 ~ 5170119 (-) True CI01000057_05163258_05169859
CI01000057_05442832_05459768.mRNA mRNA upstream 490448 5442784 ~ 5459768 (-) True CI01000057_05442832_05459768
CI01000057_05464070_05466835.mRNA mRNA upstream 511704 5464040 ~ 5469344 (-) True CI01000057_05464070_05466835
CI01000057_05486207_05495209.mRNA mRNA upstream 533704 5486040 ~ 5495657 (-) True CI01000057_05486207_05495209
CI01000057_05553430_05562372.mRNA mRNA upstream 599222 5551558 ~ 5562448 (-) True CI01000057_05553430_05562372
TU279999 other downstream 18133 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 18410 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 1051862 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 3028132 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 3144400 1805098 ~ 1805153 (-) True G244797
TU280085 other upstream 258774 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 971204 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile