RNA id: TU280099


Basic Information

Item Value
RNA id TU280099
length 684
lncRNA type intronic
GC content 0.41
exon number 2
gene id G246793
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5063388 ~ 5093263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCACCATTATCTGAAGCAAGCTGACTTAAAGGAGATGCTTTCTCTTTTTTGGGAGGTCGCCAGGCTCCTCCATATCTCGCTCAGCTCCCATCTGCCAGGAACTCTCTCTGTGAGAGTGGCCAACACCCACAACTTGGAGAAAAGTGGGCGCTCTAGCAGCTCAATAATACCCACGTAATGTGCCGTAGCATCCAGGAGACTTGTGTCGTCCTTCTTTATTCAGTCGAGGTGAATTGACTTCCTTCCATCAGCCCAGGTATAGCATCGACTGAAGCATGATGGTTATGCTAAGAAAGAAGAAAGTCAAATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGCTAATTTTCATTTTAAAGTGAACTAATCCTTTACTAAAACAACCCAGCGCTGGGTTGCCAAATAACCCAAATTGGGTTGTTTTTAACCCAGCATTTTTTAGAGTGTAGCATGCATATTATTAGCTTACTGGCTGTTTATCAGTACTTATAAAGCACATATTAACGCCTTATTCTGCATGACCTTATTCTACATCCCTTAATCCTACACAATACCTAAACTTAACAACTAACTTATTAACTATTAATAAGCAGTAATTAGGAGTTTATTGAGGCAAAAGTCATAGTTAATAGTGAGAACTGGACCCTAATCTAAAGTGTGACCCTATGTTTTTTCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280087 lncRNA downstream 6895 5081269 ~ 5083402 (-) True G246782
TU280052 lncRNA downstream 120335 4969033 ~ 4969962 (-) True G246764
TU280051 lncRNA downstream 126757 4963341 ~ 4963540 (-) True G246763
TU280040 lncRNA downstream 137961 4949553 ~ 4952336 (-) True G246753
TU280036 lncRNA downstream 143675 4946387 ~ 4946622 (-) True G246751
TU280077 lncRNA upstream 64024 5157287 ~ 5172849 (-) False G246780
TU280076 lncRNA upstream 67478 5160741 ~ 5216374 (-) False G246780
TU280070 lncRNA upstream 121016 5214279 ~ 5216374 (-) False G246780
TU280079 lncRNA upstream 121016 5214279 ~ 5283617 (-) True G246780
TU280154 lncRNA upstream 168629 5261892 ~ 5271353 (-) False G246847
CI01000057_04927533_04931127.mRNA mRNA downstream 159170 4927533 ~ 4931127 (-) False CI01000057_04927533_04931127
CI01000057_04916382_04926437.mRNA mRNA downstream 163860 4916382 ~ 4926437 (-) False CI01000057_04916382_04926437
CI01000057_04891502_04906844.mRNA mRNA downstream 183453 4890235 ~ 4906844 (-) True CI01000057_04891502_04906844
CI01000057_04866089_04878847.mRNA mRNA downstream 211450 4866089 ~ 4878847 (-) True CI01000057_04866089_04878847
CI01000057_04861618_04865902.mRNA mRNA downstream 224395 4861618 ~ 4865902 (-) True CI01000057_04861618_04865902
CI01000057_05163258_05169859.mRNA mRNA upstream 69377 5162640 ~ 5170119 (-) True CI01000057_05163258_05169859
CI01000057_05442832_05459768.mRNA mRNA upstream 349521 5442784 ~ 5459768 (-) True CI01000057_05442832_05459768
CI01000057_05464070_05466835.mRNA mRNA upstream 370777 5464040 ~ 5469344 (-) True CI01000057_05464070_05466835
CI01000057_05486207_05495209.mRNA mRNA upstream 392777 5486040 ~ 5495657 (-) True CI01000057_05486207_05495209
CI01000057_05553430_05562372.mRNA mRNA upstream 458295 5551558 ~ 5562448 (-) True CI01000057_05553430_05562372
TU279999 other downstream 158877 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 159154 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 1192606 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 3168876 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 3285144 1805098 ~ 1805153 (-) True G244797
TU280085 other upstream 117847 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 830277 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile