RNA id: TU280658



Basic Information


Item Value
RNA id TU280658
length 2700
lncRNA type read_through
GC content 0.38
exon number 1
gene id G247284
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 458090 ~ 460789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCTGATCAGGCTGGTGTCACATGGTTTGTGTTTGCAGTCACTTCAAAGCGCTGGACTAACTTCTGTTACACAGTTATGATGAAAGTGTTTCATGCTTCCTTTGTGAAATACTGAAAACTACAGAAGAAACATTTAATCGCAAAGAGTGAAACAATGGAAATACCAGCCATAAATCTCAAGAGATGCCCGAGATCATAGGTGCAGCATGTGCCCATGACTGAATGCTCACTAGGTTTTGAGCCACGGCCTGTATCTAAGGAGCTGGACTGTGTGTGTTTTCTCTGCAGGCCATCGTGTTGGTTCATTGGATACTGACAGTCTGGGCATGCTTGTATCCCTGGCTTCCTACGTCTTATGTGTTAGGGAACGGTAGTGTTCTTGCAGTGGGAGTGTGGGCCATAGCACAGAGAGACTCCATAGATGCTGTATTATTGTTTTTGATCGGGTTGGCAGCGACCATCTTGACTGACATTGTTCATTTTGGTCTGTGCTATGTGACGCCTGCAAACCTGCCGGATTTGTTCCGATTTAGTGCAGGCATGGCCATCCTGAGCCTGGTGCTCAAACCTGTTTCCTGTTTCTTTGTCTACCAGATGTACCGTGAGCGGGGTGGCGAATACAACATCAACTTTGGTATCCCAACAATAACTCGAAACAGAGATGCCTACCAGTCCATTGACCATCAGGATCAGTCTGGCAGCTCTGCCAGGCCCTTCAGCCAAACAGAAGATAGCAAAAATGGGCCACGTTCCTACTAAATAATGACCAAACCCAAAATATAACCAACCAGCTTTCTGTGCTGCCAAGGTCATAACGTATATGGACTTTTTGTTTTAGAATGGTAATTTTTGTAGGTCATGAATATACAGTACAAGCTCCAAAAGATTGAATGAAAATTTTGAACAAATTATACAAACAGTTTTACATTTGGTTATGCAGAAGATGTTTAGATGATGTGGTCTGGTAATTGAGAGGTCCATTAAGCCCCTCTTAAAAAATCCTAGTGTTCTTCATCCTGAGGTCCATGTTATGCTCTTTACAGCAGGTTATATATCTTTGTGCAAGATGTTAGCTGTTTCCAAAGGTTTTTAGTTTCTTAGAAAGGTCTCCTGAAGCTGTGATTTTGAGGTGTTTAGAAGCTCTCCTGCTAAGTGTCCATCTGTTACTGTTGGTGAGTTGCAAATTGCAATCACTTCTGGTCCAAAACAGTTTGATTTACTCAGCATATGTCAGTGTGGTTACACATGTATTTTTTTCATTTAATATTTGCAGCAGGACTCCAACATTTGTTTTTGTGACTCCTTCAAAGATTCAAAAGATTCTTGCTAATCCAAATTCTATGCAACCTGTTGTGTATTCATGTAGTATGATTTATTATATCATGCACACTGGATTATTTTTTGCTAATGGTAATGCTAAAGTTGGACATCTGCAATTGGGATTTCCTATCAAATATTCCTGAGCCTGTTTGAGGCTGTTTGCTTAAGATATACTGCTTTGTCTGTTAGCTGTTAGCAAACTAATCTGTTACATAACTATTTCAGTTCTGTTTAATCTAAATCTTCCTTTTGTTTAAATTCTCTTTATTTCCTCAGTGGTAAGAAGCCTGCAGAGCACCTCAAATATCTATTTCAGATTAGTTCCCACTGCTGGTTTTATATTCCTATTAGTGATATTATATGTTGTCATAGAAACACCACAGTGCTCATTTAAATTATCTTTTGGTTTGTTCCAGTTTTCATTGGCAAGAAGGATTATGTGGGTTGATTATATTGTAAATATATAATATTGTAAAATAAAATCAGGGTGGTAAAAGTTATTGCATATTATACCTATTGTATTTTTGGTCCATTTTAGGTCCATATATATAATTGAATTTTCCCCCCAAACCATTAAAAATCCATCCAACTGAAAGCTGATTTATACGTCTGCCTTAGCCTGACTTGCACCTCTACAAAATGTAAAGGGCCCAATATACTTCTGTTAGAATTTTACTGTAGACATTATATACACTGGTTTCTCCTAACCAAAGAATTAGTAGGTGTGTCCAAACATCTGAATGTAGTGTTTAATATATTTTGACCTCAGGAAGGCAGTATCTTGTCATAAATGTCACAAGAAAGGCATAATTATAGTTATTAAATCCCCAGAGAATAGTTAACTTCCCTGTTCTTGTATGAGGAAGTTCAGTGTGCTGAATGAACTGAAACCAATAGAATGGCTAATACAGCTATACAGAAGTGTGTTTCTCCTGCAGAGGGCGCACTGTGGCTCATAGTGCCCCATTCACACTATAGTGGGAGGATTACATTTTTTTTTTTTTTTTTACAATTGCTTACACACTAAAATTAAAAATAGCACACAGTTACTGAAACTCTACACTCAAGGAGCAAAACCTTAGCCCAGATCTGCAGAACTATAAGCACATTCTCAGTCTCACACTTTTTGCAAAACACTACACACATTGTTTTGCACAACACTAAACACACTTCTCTACATTAGACACAGAAATCTAACATAATGTCACTTCTTTGCCATTTCAAGACACTGCTTTCCAAAATATTTTGAATGTCCCAGGACAACGTGATGGTAACATCACAATGTATGTTGCAATCACGCAGAATGGGGTCCTCCACCAGCATGCCAACTTAGGCCCTTACGGCACGGCCCACATATTCACATTTTAGACAGACTACACAAAATTGTCACAGCAGAAGACCAAATGAATGCAGAGCAGATGAGATACATTGTCATGGTCCAAAACTGGTTTCATTAGCGTTCGCAATTTTCACTCCAATACATCCCACCATACTGTCCCTTCCTTAAACCCATTGAGGAGGGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGACATGGAAGGTTTACAATCTCCAGCACTATGTCAGGATTTGCCTCCTTCAAGAGTAGGCCTGACCAAATTGATGCAGGGTCTGTGCAAGGATGGATTCGCCATTCAAGAAGATTCTTCCCTCGCTGTCTTGCGTGAGAGGACAACGCCTGTGATGTGGCCTGTGATGTGGCTATGGCCAGATCCAGATAGGCCAAGAGATGATGCTCAGGTGTTTTTTCTATTATTATTATTTTTTTTTTTTTCCATTTAAAATCATGCTTTTGTTTTGTCTCCACAAATGTTTTTGTTCGTGTAATTTATTGTATTTAGAATATGTTCTGATTTTCAGTGCAAAATGTAACCTTTGGAAAGGCATGGATGTATTGAATGGTTTTACAATGTGGTGAGAAATAAATATTTTCATCAATGTGCA

Function


GO:

id name namespace
GO:0038166 angiotensin-activated signaling pathway biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280700 lncRNA upstream 1579 428444 ~ 433463 (+) True G247317
TU280695 lncRNA upstream 7580 427247 ~ 427462 (+) True G247316
TU280672 lncRNA upstream 8947 425758 ~ 426095 (+) True G247293
TU280693 lncRNA upstream 13512 421130 ~ 421530 (+) True G247314
TU280688 lncRNA upstream 102515 332262 ~ 332527 (+) True G247309
TU280706 lncRNA downstream 2950 463739 ~ 463981 (+) True G247323
TU280726 lncRNA downstream 28377 489166 ~ 489403 (+) True G247342
TU280721 lncRNA downstream 45519 506308 ~ 507353 (+) True G247337
TU280996 lncRNA downstream 222437 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 255721 716510 ~ 716777 (+) True G247578
CI01000058_00382692_00395743.mRNA mRNA upstream 39268 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 79167 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 120372 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 188935 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 328318 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00466891_00481927.mRNA mRNA downstream 5844 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 56361 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 68396 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 87038 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 131675 592464 ~ 596813 (+) False CI01000058_00592498_00596709
TU280966 other downstream 131542 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 767820 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 992208 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1334924 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4233619 4694408 ~ 4696910 (+) False G250039

Expression Profile