RNA id: TCONS_00016887


Basic Information

Item Value
RNA id TCONS_00016887
length 1251
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_008437
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19783352 ~ 19793361 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTGTGTTCTCTGTTTCCAGCTGTTGAGATGGAGTGGATGTGTGTTATTCTTGTGCTTTTCAAGGGGATTCATTTAGCTTTTTCACAATTCAATGGATTCAACTGTGATCCCAACTACCACAGCAGATTTCCTGGTGAGAGAGACATCAGCATCTACTGTGGTGTTCAGACGATAACACTGAAGATCAACCTCTGTCCTGTGTTGTACTCTGGATACACTGATGTTGACCTGGCACTGAACAGCCGTCATGGAGAACCGCAGTGCAGAGGCTTCATAAACAACAACACCTTTCCCACAGCGGTGCTCTTCAGCATTAGCCTGAGCTCACTGGAGGCCTGTGGGAACACACTGCAGGTTTCTACAACTCAAGGCATCAATGCGTATGGGAACATCTCTATGGTCCAAATGGGAAATATTTCGGGCTACATCGACACTCCAGACCCACCAACTGTTATCAGCTACCTGCCAGGACTGGTGTATAAGTTCAGCTGTAGTTATCCTCTGGAGTACCTGCTCAACAACAGCCAGCTGGCATCCTCATCTGCTGCAATAACAGTTAAAGACAATAATGGCACGTTCCTGAGCACTCTCAGCTTGGTGCTTTACAATGACTCAACCTTTAATCAGCTGATCTCTATACCAGTGTCTGGACTGTCCTTAAAGACTCGTGTGTTTGCTGCCGTTAAAGCTACGAATCTAGATAGGAGGTGGAACGTCCTGATGGATCACTGTTACGCCACCCCCTCTGGGAACCCAAAAGATGAGATTCGCTATGACCTTTTCTTTGGGTGCTACAAGGATCCACAGACCACTGTTTTTGAGAACGGGAAAAGTCAGATGGGTCGTTTTGCGTTTGAAGTCTTTCGTTTTGTGAAACATAAGAACCAGAAGATGTCCACTGTGTTTCTGCATTGTATCACAAAGCTGTGTCGGGCAGATGACTGTGCAATACTTATGCCGATCTGTGGAAAACGCAGGAGGAGAGACAGTGAGGCTGAGCATACAGTGTCAGGTTCTTCCTCAGGGGACGCCGTCATAACCGCCGGCCCCATAATCACCAGGAGTGGTAAGAGCCTCCATATTCAGCTTTATAGTCGGTTAAGTCCTCTGAATGCGGTCACCAGTGCACTGATTTCGGGTGTGGTTGTGCTGGGTGTGATGAGCCTGGGCCTCTTCATCCTCTCCCTCAGGCTGCTCAGGAAGCCCAGCCCGTCTAATCTGACCGGGCTCTGGAACCCCAGCTCCAGATGA

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-104 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

Ensembl:

ensembl_id ENSDART00000178784

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016885 lncRNA upstream 27534 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 28549 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00018924 lncRNA upstream 61598 19688987 ~ 19721754 (+) False XLOC_008435
TCONS_00018923 lncRNA upstream 74502 19688875 ~ 19708850 (+) False XLOC_008435
TCONS_00016884 lncRNA upstream 74856 19688875 ~ 19708496 (+) False XLOC_008435
TCONS_00016917 lncRNA downstream 617931 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA downstream 631273 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016931 lncRNA downstream 1089599 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016932 lncRNA downstream 1097958 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 1103742 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00016883 mRNA upstream 94963 19682013 ~ 19688389 (+) True XLOC_008434
TCONS_00016882 mRNA upstream 96907 19681718 ~ 19686445 (+) False XLOC_008434
TCONS_00016878 mRNA upstream 122595 19646902 ~ 19660757 (+) False XLOC_008433
TCONS_00016879 mRNA upstream 123774 19652807 ~ 19659578 (+) False XLOC_008433
TCONS_00016880 mRNA upstream 123774 19652810 ~ 19659578 (+) False XLOC_008433
TCONS_00016889 mRNA downstream 4557 19797918 ~ 19803478 (+) True XLOC_008438
TCONS_00016890 mRNA downstream 45097 19838458 ~ 19878987 (+) True XLOC_008439
TCONS_00016891 mRNA downstream 90881 19884242 ~ 19896816 (+) False XLOC_008440
TCONS_00016892 mRNA downstream 90885 19884246 ~ 19896816 (+) False XLOC_008440
TCONS_00016893 mRNA downstream 92137 19885498 ~ 19890431 (+) True XLOC_008440
TCONS_00016873 other upstream 443348 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 453409 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016857 other upstream 1696536 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 2026585 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 2366745 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016899 other downstream 196762 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 562434 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 735919 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016934 other downstream 1373781 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 1386733 21180094 ~ 21198286 (+) True XLOC_008459

Expression Profile

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