RNA id: CI01000058_02100559_02106600.mRNA


Basic Information

Item Value
RNA id CI01000058_02100559_02106600.mRNA
length 1103
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000058_02100559_02106600
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2100018 ~ 2106652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTGGAAAGGAAATAACAGGTTTCATATACTGCTCTGACTGTGAGAAAGAAATGAAGGAGAGGAGGAAAAATAGAGCAGACTGCAAAGGGGTTGGGGGCAAGAAAGGGAGACTTCTAAAAGGAGGAGGTGGGGCTACACGCATCGCTAATGAGGCGGAGGGTGTGACAGAACAGATGCCTCAGAGTGTGAAAAAGAGATACAGAGGCGAGACTGTGGAAGAAAGGGAGAGAATGAAAGGCAGACTGGACAGTCGACTTTACGCACACCCCTCTTTCTATTTCTCGGCTCGGTCATCCACGGGCAAGGGCCGACTCCTAGCAGACGACAAACGGCAAATGAGCCGCGTGTGTATGTGCACAAATGTGAGCGAGCATATGCGTAATAGGGTCAAAAGGGCTGCTGGACTTCACCTCTTGTACTCGCTGACGAGGGCAGATGAACTCAGGGCAGGAAAGATCACAGACATCTGTCTGAAAGAGAAAGAAAAAAAAATGCACTGTCACAACACAGCCCATCACAACACTGACGCACTGTTCTGTCTGTGCGCTGCATTTCTGTAAGCATACATACAAACAAATCAGCTGAAGGAGCTGAGAAATCAAATTGAATCAGTGAAAGTGAAAGACAGGACTGGGATGTGAGGTCTCCTCTGTGTAGCTCATGGCTTCAGTCGCCTAACAGGCATCCTACATAAAGACAAATAAGGCTGAGTATATTGTGCATCATATCTGCATAGGCATATAGTATGCACTGCTGTCAGAAGTGAATATGTTTTGTGCTGAGAGTGGTACAGATCCGTCTGAAGAAGGAGGTGAAGACAGAGCACTGCTCACAAGCCTCAAGGGCATATCTGTGAATAAGCAAACACATCAGTCTGCCATCTTGCAGCACGATGATGAACGCAAACAGTGACAGTGAAACAACTCGAACAGATTTATCAAGCGGTCGGCCATTAACATTTCATTTTGTAGCTCGACAGAACGATGTTTGTGTACTTTGTAATGAGCAAAAAGCTCTGGTTAGTTCAGCTACTTCATTGGACCGTTTTTTCGGATTGTTGGCACTGAAATCTGCAAAGAAAAACTATTTTGTGTCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282599 lncRNA downstream 12865 2071732 ~ 2087153 (-) True G248999
TU282570 lncRNA downstream 60878 1982037 ~ 2039140 (-) True G248979
TU282603 lncRNA downstream 101316 1995005 ~ 1998702 (-) True G249003
TU282592 lncRNA downstream 114633 1984163 ~ 1985385 (-) True G248994
TU282719 lncRNA downstream 176984 1921931 ~ 1923034 (-) True G249118
TU282805 lncRNA upstream 190913 2297565 ~ 2309005 (-) True G249183
TU282808 lncRNA upstream 208928 2315580 ~ 2321692 (-) True G249186
TU282782 lncRNA upstream 215157 2321809 ~ 2332361 (-) True G249176
TU282837 lncRNA upstream 256729 2363381 ~ 2364654 (-) True G249213
TU282838 lncRNA upstream 258226 2366812 ~ 2367547 (-) True G249214
CI01000058_02049299_02051461.mRNA mRNA downstream 48209 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_01807681_01819809.mRNA mRNA downstream 280209 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_01694694_01723697.mRNA mRNA downstream 375810 1694679 ~ 1724208 (-) True CI01000058_01694694_01723697
CI01000058_01680894_01693752.mRNA mRNA downstream 405813 1680794 ~ 1694205 (-) True CI01000058_01680894_01693752
CI01000058_01528111_01564969.mRNA mRNA downstream 535049 1527499 ~ 1564969 (-) True CI01000058_01528111_01564969
CI01000058_02192060_02196086.mRNA mRNA upstream 85144 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02198525_02205429.mRNA mRNA upstream 91844 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02207230_02214219.mRNA mRNA upstream 99617 2206269 ~ 2214219 (-) True CI01000058_02207230_02214219
CI01000058_02235326_02347093.mRNA mRNA upstream 128674 2235326 ~ 2347093 (-) False CI01000058_02235326_02347093
CI01000058_02366247_02370447.mRNA mRNA upstream 259574 2366226 ~ 2370756 (-) False CI01000058_02366247_02370447
TU281026 other downstream 1445069 646443 ~ 654949 (-) True G247592
TU282944 other upstream 751831 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1581991 3688643 ~ 3696711 (-) True G250230

Expression Profile