RNA id: CI01000058_02207230_02214219.mRNA



Basic Information


Item Value
RNA id CI01000058_02207230_02214219.mRNA
length 4540
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000058_02207230_02214219
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2206269 ~ 2214219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCTAAACTGCAAATTTTAAGCATTGTTCTGACAGAGAGATTAACTTTAGCTGCGCAGGAGATATTCAAGGCTGTGGAAGACATATTTTCAGAGTATGATGATGAGATTTGTCGCTCCAGACAGGAGATTGAGTTGCTCAAGAAGAGACTGCAGCAGGCAGGAATTCAGATGGATTCTGAAATGCAGCCCTGCTCCTCTGAGACTCAAGCTCAGAAATATACACAGGCATTTTCAGAAGCATGGAGATCTGAACATGACTTGAAGGATACAGAAAAGCATGTAAAGCTAGAAGTTTATACACACCAGGAGGAGAATGAAGTACAAATCCCTGTGTGCAACGAATCAGCACCTTTATCACCATGTATGGACATTTACCATGACCAGATGCCCAGCAAAGACACTGAACCCCAAATGATAGATAGCAGTGAGAATACTTTTCCATTTATTAACCAAGCACCTCAAATTAAGATTGAACCTGAGACTAATACTGAAACAGGTATCACCTGTCAGGCGCAGCAGCACATCACAAGATACAGCTTGAATGATTCAGCGGCCAGCGATGTCAGCAGAATCAAAGTCAGCCACATTGGCTCTCCTAGACATAAGACACAAACATTTAACCTGCCCCTCAGAAATCAAGAGATGTTGACGCAGCATAGGATGGAGCTGGCTCAGATAAAAGAAAGAATGTCTTCGAGAATCCAGCACCGTAACTCTGAGCGTAACAGTAAGAAAAGTCAACCGTATGTCTGTCAGGATGAAGTGTCACTATCTGACAAGTGTAAAGCCAACAATGCGAGAAACAGTCAGGCCTGGAGGGATCGTCTGAAAAAAGACCCTGTAAAATATGCTGAGTTCAAAGCTTTGGAAGCTGCAAGAGCAAAGGAGTACAGAAGAAAGAGGACTGCTGCTGCCATAGAAATTGATAAGGAAAATAATCGTGAGCGACAGAGAAGATTCAGAGCCAAAAAGAAGTTACAGTGTAGAAGAACAGAAGAAAAAGAGTGTAAAGCTGAAGAAGAGCCTCTCCCACCTAAGAAAATAAGAAAAGTCTTAACAAGAAACGAGCGGATGAAGAAACGAGAGTATGATAGGATAAAGAAAAGAGAGGAGAGGGAGAGGATGGGAGAACAGAAGAAAAGACAAATTCGTGAAAGAGATGCGTCCCGAAAGAGGGAAAAAAGAAGACAAAAAAAGACAAAAAAGCGAACTATCACTCCACAAACAAATGTTGGCTCTCCAAGTACATCTACAGGCTTTAGAACTGAATCAGCAAAACAGGTGGTAGTGTCACGGATGTCCAAAAAAATTCCGGCTGATGCAGAAAAGTTTGCGGACATGGTAATGGACTTCATCCATCACTGTATTCCTCGTAAACAAGCAGCTTTGAAAGCTAGAGGTCTGAAAACAGCTCGTCGACGAATAGATTTTGATGACCCATCTCAAGAAAAACTTCGATCCATGATTGAAGCTCTAAAGAAGAAGAAGGATACTGCATCCTTGGAGAAGAGGCGCCTGATTGTCACTAGTTTGATGGTTGCCAAAAAGTACAGAAGGCAACATATTGTATCAAGGCGCTTTAACCTTCGTCCAGCATATCTTACCAAATTATCAAATTCCTCATCCAATGAAGGTTTACGTAAAAAACGCAAGCCTGATGCCACTTGCATGGATGTTGTGAACAATATAACTGCTTTCTATCGTAATCCTAAGGTAGCACGAGAACTTCCTTACATGAGGACTGTAAAGAAACAACAACAAACATTCCTCATGGAGATCTCTCTTCAGAAAGCCTATGAACTTTGGAAGCTGGAAAATCCAGAAAAGAATTTTGTGTCCTTTGCTGTTTTCTCATGGCTTCGACCTTCATGTGTTCTTCTTCAGCGTCGGACAGACATAAACCATTGTCTCTGTGAATATTGTACTGGAGTTTTACTGAAGCTTCAGAGCCTGAACAGAATTCTCACTGCTACTAACAATGACAAGTGTATGAAACTCAAGATCAAAAACAAATATGAACTTATCAATTTTTCTCTATGTCCCAAAAGTGGCAACAGCAAGTACCATAATCTAAAGTGTATTAACAGAGCCTGCTCCGACTGTGGTGTATCGCTTCTCAAGGAAAAGTTCAAAGCGGTACTAGATTCGTATGGCAAACAAGAAGTGTCCTGGCAAAAGTGGGAGAGTAAGGCTTTCAACCATGATGGTAGACAAAAGACCAAGAAGGTTCAATCAACTAAGTGTGGCACATTCAAGACAATGTTTGATGAGTTATTGGGCGAAACAGACTTTTTGGCTAAACATCTCTTTACAGCCAACTGGCAGAACGACCAGTTTTCCCTTATCCGGGAAAAGTTGCCCAATACTTGGTCGCTACTCGTCATGGATTTTGCTGAAAATTACTCGTGCATATCCCATAACGAAATGCAGAAATGCACACAGCAGATAACCGTTCACCCAATTGTTTGTTACTACAAGTGTCCCACAGAGGGTCACAATCACACGGTCCAGGAAGCCTTGGTTTTTGTTTCGGATGACCTCAACCATGATGCCAATGCTGTTCACCACTTCGAAACTCTGGCTATAAAGCACCTAAAAGAAAAGCGAGGACTGAAGTTAGAGCACGTAGTTGAATTCACAGATGGCTGTGGCGCACAATACAAGTCAAAGGTGCCATTTGCTGATATTAGCAACTCCAAGGCTTCTCATGGTTTGTCTGTTGAAAGATGTTACTTTGGATCCCGCCATGGCAAGGGGCTCAGTGATGGTGTCTCTGGGGTTGTAAAATCATCTGTTCGATGTGCTGTCCTGTCATGTAGGATCACTATTAACAATGCAGAGGAGTTGTATAATTTCTGCAGTCTAAATTTGACAAAAGATGGCTGTGATGGGCAACTCTGTACATTTTACCTGGTTAAACAAGGTGAAATTCAGCGTGACCGTTTTATAACACAAGTGAAGTCTGCCCTTGCTGGAACTCGTTTTCTCCATTCTGTACGGTGTGTTTCTCCTGGGGTCCTGGATACTCGCGTGTATTCATGCTTCTGTGATGGCTGTATGAATGTTGATGATGGAAACCAGTGTTCTAACTCAAAATATGTCCTTCCCTGGCAACGACGTACCTTGAACATAGATGCTGAAATAGTTGATTTATACCAGCATGAAGAGGAGAACACCTTACCTTCTGCTACAAGTGAAGATGACCAACTTCCTGGTGAACAAACAGAAGATCTCTGGATGAAACTTACTAACCCAGAACTTCCAACTGATAACTTGGATTTGCAGATAGAAGATCTCAGGGATTATGCTGTGCTGTACACCTGTCCACCCAAGTGGTGCTTGGGTAGAGTTCTTCAACCACCAACTGATGGAGGAGTCCAGATGAAGTTTCTGGAGCAGTGCGGAGTCAGCAATTTGTTTTCCTGGCCCAAGACTCCTGATGTTGAACTATTAGATCCAGTCCACATATTTCATGGACCTGTAAACTTGATTGGACACCATCCAATCTCTGTTGATGAAGAGGAGTTTAAAAACATTAATGAGAAATACAAGACAATAAAGAAGAATGCATGTTAGTTGATATCAAGCATAATTCCAATATGGAGAACTGACTTCCCATGAATGACATTTCAGAACAAGTATATACTGACTGCCTCAGTAGTTACTCACGTTGAATTTAATGCTACGTTTAATTACCCTTTTGCAGATTTTTGAGAGAGGAACATGAATTGATTCTTTAGTGTCATCTGTGCTGATTTGAGTTAACTTATTCTAGTTAAATGAAGTGTGCACTAGCTTGACGGCACAAATCCTTTGCCTGTTATACATGTAGATTGTTAATAATGCTTAAATGTCACACTCCCTTATCAGCTCTAAACTAAGTTTGCATTTACTTTTAAATACAGACAAAATTTCTTAAATATGGCTTGGTTTTTTTTGTTTCAGGCTGTCTAAACAAGACAACCTGAACCACCCCCCAAGTGGTGTCCCCTCAGAAATAAGTGCATGACGCCCATGGATAAACTCATCTATGCACTAGTTCGCTTTCACTGCCTCGTGTTTATACTCGCGCTCTTTCAAACTATTTATTTCATGGAAAATGTTTTCAAAAAATGGGTTCATAATGGGAACCATGAAGACACTATATATGAAGTGTCTGACAGAACCCCCTAAGGTTCAGAACCTTTTCTTCTAAGATTTACATTTATGTTTCCATGGCAACAGAAAGTGATCCTCATGGCAGTGAGAAGAAGGATGTGGTGTGTTATTTTGAAGGTGAAAGGATGTAAATTGATAAATTGATTTGTTGAGGGGTGAGAGATTATGCAGCATATATTCCTCAATTCTTGAACTCTTGAATCAAACTTAGAGGGAGGGATGGAGATGTCCACTGTTTTCTAAGGATTTTGATTTATAGTTTGTAATTGACCAAAGGGCTTTTTAACACAGATGAACAGTCATTTGAGGAAAAACACTGTTCTAGTGTTTAAACTTGTTTCCTTCAAGAATCTCTTGAATATTACAAAACTGTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282599 lncRNA downstream 119116 2071732 ~ 2087153 (-) True G248999
TU282570 lncRNA downstream 167129 1982037 ~ 2039140 (-) True G248979
TU282603 lncRNA downstream 207567 1995005 ~ 1998702 (-) True G249003
TU282592 lncRNA downstream 220884 1984163 ~ 1985385 (-) True G248994
TU282719 lncRNA downstream 283235 1921931 ~ 1923034 (-) True G249118
TU282805 lncRNA upstream 83346 2297565 ~ 2309005 (-) True G249183
TU282808 lncRNA upstream 101361 2315580 ~ 2321692 (-) True G249186
TU282782 lncRNA upstream 107590 2321809 ~ 2332361 (-) True G249176
TU282837 lncRNA upstream 149162 2363381 ~ 2364654 (-) True G249213
TU282838 lncRNA upstream 150659 2366812 ~ 2367547 (-) True G249214
CI01000058_02198525_02205429.mRNA mRNA downstream 832 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02192060_02196086.mRNA mRNA downstream 10183 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02100559_02106600.mRNA mRNA downstream 99617 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
CI01000058_02049299_02051461.mRNA mRNA downstream 154460 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_01807681_01819809.mRNA mRNA downstream 386460 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_02235326_02347093.mRNA mRNA upstream 21107 2235326 ~ 2347093 (-) False CI01000058_02235326_02347093
CI01000058_02366247_02370447.mRNA mRNA upstream 152007 2366226 ~ 2370756 (-) False CI01000058_02366247_02370447
CI01000058_02463470_02484038.mRNA mRNA upstream 248086 2462305 ~ 2484038 (-) True CI01000058_02463470_02484038
CI01000058_02507677_02545533.mRNA mRNA upstream 293375 2507594 ~ 2546413 (-) True CI01000058_02507677_02545533
CI01000058_02548351_02550351.mRNA mRNA upstream 333791 2548010 ~ 2550548 (-) True CI01000058_02548351_02550351
TU281026 other downstream 1551320 646443 ~ 654949 (-) True G247592
TU282944 other upstream 644264 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1474424 3688643 ~ 3696711 (-) True G250230

Expression Profile