RNA id: TU282570



Basic Information


Item Value
RNA id TU282570
length 2376
lncRNA type read_through
GC content 0.40
exon number 2
gene id G248979
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1982037 ~ 2039140 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCACTGGTTTGATTATTTATTTTACATTTAAAAAACAAACAAACAAAAAAATTACTGTTCATACTGAATTCAAGAAGAAAACATGTCCGGATAAAACAAAAACAAACTTCATTATATAATTGCATTGGCATAGGATGAATTTGTTTTCGCTTCCATACTATGAGGCATAATGGCAGTGAAATAGCAGTTTTTGTACCACACAAAAAAGTCCAGGTAAATTTGGATGGGATTTTAATACAGCTTCCACATCCTCAAAAAGTAAATAACACAGCATTAATTAGAAACAAGCAAAGCTAGTCCCATGCGTTTACTGCGTGTGAAAAGATCTTTCGCCCTCTGGTGGCCGAGGACAACAGAATTCCTTTGCAAAGAGTCCTCTATGGCTGCGCTTAGACAATACACAACAGAGACTGAATCCACTTTGTTATGGGAAACAACGCAGTTCTAAGAAAAGCAGAGGATAATAACCCTAAAATCCCACATAACAGAAGTGCTCTAGTAAATTTCACTGAACACTGCCAACAATACAGATGACCTTTCTGCAAAATAAAGCACTATTTAAAAACAAACAAAAAAAGTATGGCAGACATTGCTTTCAAAACACTTTTTTGTCCCATAAATGTCATCTCACCTGGCAGCTCTATGGAAAAAAAGAAATCCTTCCACTAACCGCTCTCATAAACATTCCTTCATAAAACATTGAACACGTGTGTGTGAGCGTGACAGGAAAACTGAATTAAAAGGGAAGGCAGAGGGCTAAACAAATAGAGCACAAATAATCCTCAATCATACATCTTATCTGTTCAGGTATAGAAAAACAACAACAAAACAAACAAACAAACAAACAAACAATGGAACAAGTAGGAGCTGAGCGTCACAAGCAACCAAAAGAAAGGTCTGGAAGCAAAAAACATGGTCATTGGCCTAATTACACTTTTCTATTGTATCTCCTACACACGAAAAGGTGTTTTAATACTTCACAATCTATAATACAATTGGTTCTTCTCATAGCACAGGAATGAATTGCAACTGTTGACTGATCATTCAAACTTAAGTTTATAAATAAATAAATATAATCTGTTTAAAGCACAGATGTCCAAAGAAAACCCTTTCACCAGGTCAACTCGATGCTTTAGTTTTTAAGTGCCTGAAATCTGCAAGGGGAAAAATCTTCTAAAATAAATTGAAACCAAAGTTGGTCAGGTACATTGAAAGGCCATTTAAAATGTACTATTACAAACTGACAGAACTGTTTCAAGGTTAGGATTTTAACTGTTTATCCATATCTTCCCACTAAGGCAGTAGCATATTGTGGTGGCTAACCCTCTCCTTCACCTGACAGAAAGCAGATGCAAAGAGATCACTTTTTCTTTAGCCAAGTTATGCTAACAAAACAATGGTGAACCATCAATATGAGGCCAGTTTCTTTAAATTACATTCTGTACATTATTTATACTTGATTTGTACTATACAATAAAATTATTATAGATAAATTGTACTATGCTTTTTATTTTAGCCCAGCAACGGTTTGTCGATTTCCCTGCCTCCTTGCGTTTATGTACAAGGAAACATTTTTTTTTTTTTTAAGTAGCAAGTGAGTGCGTGTTTAATACATGCGTGCCTTTAAGATGTTTCGGTCATGCTATGAAGGTTTTGATGACCTTCTGTATAACCTGGCCACAGCCTGGGCAAGGAGCGTGAAATTTGTGCAGCTTGCGGGCACAGGGGAAACAAGTGATCAGGTGAGCTGTGCGGCCGTGGATGATGTTGCCGTTTCTTGGCCGCACTCGGCACAGCTTGCAGGGTTCTAGCATGGCCTCGGGATGGCATTCTGTTTCCATGTCCAGCGTGTCCTGGCTGTCACCCTCTGAGCTCTCCTGTAAGTGGTGGTGAAGGCGGGAAGGACCCTTTCCTTTAGACGATGAAGCAGATGATGAGGGGATGTTTCTAGAGACATGGTGCGAGGGGAGGACGACAGGGTCAGACACCGTCCTAAGGCAGTCAGGCATGTCGATTCCATCATCCTCCTCGTCTTCCTCCCTCTCAGGACGTGAACTGCAGATGGGGATGTCTGGAACAGAAATGGAGTGTACGAGACGAGGACAATCCTTGTACCAGTCTTTCCGCAGAGCCCAGCAGCGCATGCAGTACCGTTGAAGAGGGAGGAAGACGAAAAAGATCAGAGAGATTTTGGTTTATTTTTACGCTCCCAAAAGAGAGTGCGGTACCAGAGAAAGAGGGTAAAGGTGAAAGAAATGGTCAAATTTTGACCAAGAGAAGAGTGTACAAGACAGCATGAAGTCCTGAGCCACACCCTAGAAAGAAGCAACAGTGAGAAAAACAAAGAGCTAAAGTAAAGAAACGAACAAAAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282719 lncRNA downstream 59003 1921931 ~ 1923034 (-) True G249118
TU282696 lncRNA downstream 125783 1856041 ~ 1856254 (-) True G249095
TU282695 lncRNA downstream 129931 1851895 ~ 1852106 (-) True G249094
TU282692 lncRNA downstream 132678 1849128 ~ 1849359 (-) True G249091
TU282690 lncRNA downstream 136768 1845069 ~ 1845269 (-) True G249089
TU282599 lncRNA upstream 32592 2071732 ~ 2087153 (-) True G248999
TU282805 lncRNA upstream 258425 2297565 ~ 2309005 (-) True G249183
TU282808 lncRNA upstream 276440 2315580 ~ 2321692 (-) True G249186
TU282782 lncRNA upstream 282669 2321809 ~ 2332361 (-) True G249176
TU282837 lncRNA upstream 324241 2363381 ~ 2364654 (-) True G249213
CI01000058_01807681_01819809.mRNA mRNA downstream 162228 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_01694694_01723697.mRNA mRNA downstream 257829 1694679 ~ 1724208 (-) True CI01000058_01694694_01723697
CI01000058_01680894_01693752.mRNA mRNA downstream 287832 1680794 ~ 1694205 (-) True CI01000058_01680894_01693752
CI01000058_01528111_01564969.mRNA mRNA downstream 417068 1527499 ~ 1564969 (-) True CI01000058_01528111_01564969
CI01000058_01510773_01517931.mRNA mRNA downstream 462855 1510350 ~ 1519182 (-) True CI01000058_01510773_01517931
CI01000058_02049299_02051461.mRNA mRNA upstream 10149 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_02100559_02106600.mRNA mRNA upstream 60878 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
CI01000058_02192060_02196086.mRNA mRNA upstream 152656 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02198525_02205429.mRNA mRNA upstream 159356 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02207230_02214219.mRNA mRNA upstream 167129 2206269 ~ 2214219 (-) True CI01000058_02207230_02214219
TU281026 other downstream 1327088 646443 ~ 654949 (-) True G247592
TU282944 other upstream 819343 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1649503 3688643 ~ 3696711 (-) True G250230

Expression Profile