RNA id: TU282592


Basic Information

Item Value
RNA id TU282592
length 1044
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G248994
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1984163 ~ 1985385 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGTAGTGTATGCTGAGTTTATGGAGATGCTGTTCACCAGTATCTCCAAAGTCTGTGGATTAATGGCCTCTGGTTCAGGAACGCTTTTATAGTGTGTGTCACCTATGAAAGCCTGCACCACTGTCATGCGATTCATAGTCAGCGTTCCAGTTTTGTCAGAGCAGATGGCAGTGGCATTACCCATGGTCTCACAGGCATCCAGGTGCCTAACCAGGTTGTTGTCTTTCATCATTTTCTTGACGGAATAAGCCAGGGAGATAGTGACAGCTAGAGGCAGCCCTTCAGGCACGGCCACCACAAGCACAGTCACACCAATAATGAAAAACTTCACAAAATATTGTATGTAGATGGGAGTACACTCCGCCGTCCACTCACGACCCTGGACGCCGAACGTATCAATTACAAAGTACAGGATGAGGATGATGACTGTCACTGCAGACATGATGAGACCTGCCGGAGGAGAGGGAGTTTTAAGACCAACACAGCAAAGGGGAACACAGAGCCTTCTGATTTTTGTTCATAACGGCAACAGCTGTGGTCTGATGTGCTCTATGTGAATGTTATTTGATTGGGTAACTGTAGGAAGTAGGATAATTAGGTGGAACACAGCCCAAAGGGACAAGCCTGTTTCCATATTGGGTGACACTGTTTCTTTAAGCAGTAAGTAAAACAAACCCTGGGAAGCAAATGAACTAATTTACTGAAAGGATGTCTAAAGAAATCAGTGTGCTTTGTACAAGCTAACACATGGCTAATTAGTATAAATATTGTGCAACATTTATTTGAAAATTATATTGATTTCTTTGTGTAAAAATGTTAAAGAGATAGTTCGCCCAAAATGAAAATTCTGTCATAATTTACTTACCCTCAAGTTGTTCCAAACCTGTATGAATTTCTTTCTTCTGCAGGACACAAAAGAAGATATTTTGAAGAATGTCGCTAACCAAACAGTTAATGGGCCCCATTGACTTCCATAGTATTTTTTTTTTCCATACTATGGAAGTCAATGGGACCCATCAACTGTTCGTTACCCATATTCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282719 lncRNA downstream 61129 1921931 ~ 1923034 (-) True G249118
TU282696 lncRNA downstream 127909 1856041 ~ 1856254 (-) True G249095
TU282695 lncRNA downstream 132057 1851895 ~ 1852106 (-) True G249094
TU282692 lncRNA downstream 134804 1849128 ~ 1849359 (-) True G249091
TU282690 lncRNA downstream 138894 1845069 ~ 1845269 (-) True G249089
TU282603 lncRNA upstream 9620 1995005 ~ 1998702 (-) True G249003
TU282599 lncRNA upstream 86347 2071732 ~ 2087153 (-) True G248999
TU282805 lncRNA upstream 312180 2297565 ~ 2309005 (-) True G249183
TU282808 lncRNA upstream 330195 2315580 ~ 2321692 (-) True G249186
TU282782 lncRNA upstream 336424 2321809 ~ 2332361 (-) True G249176
CI01000058_01807681_01819809.mRNA mRNA downstream 164354 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_01694694_01723697.mRNA mRNA downstream 259955 1694679 ~ 1724208 (-) True CI01000058_01694694_01723697
CI01000058_01680894_01693752.mRNA mRNA downstream 289958 1680794 ~ 1694205 (-) True CI01000058_01680894_01693752
CI01000058_01528111_01564969.mRNA mRNA downstream 419194 1527499 ~ 1564969 (-) True CI01000058_01528111_01564969
CI01000058_01510773_01517931.mRNA mRNA downstream 464981 1510350 ~ 1519182 (-) True CI01000058_01510773_01517931
CI01000058_02049299_02051461.mRNA mRNA upstream 63904 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_02100559_02106600.mRNA mRNA upstream 114633 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
CI01000058_02192060_02196086.mRNA mRNA upstream 206411 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02198525_02205429.mRNA mRNA upstream 213111 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02207230_02214219.mRNA mRNA upstream 220884 2206269 ~ 2214219 (-) True CI01000058_02207230_02214219
TU281026 other downstream 1329214 646443 ~ 654949 (-) True G247592
TU282944 other upstream 873098 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1703258 3688643 ~ 3696711 (-) True G250230

Expression Profile