RNA id: TU282603


Basic Information

Item Value
RNA id TU282603
length 1287
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G249003
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1995005 ~ 1998702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGATCTAAAACACCACGCACGTATCTTAGCAGTAAGCTGCCAAATAGCAAAGACAGTTTCTCCAGGCATCTACAGTGGCAGAGTTGTGTGTAGATCACTGCGGTTGTAATTAAGCAATTAATACTCTCTCCTGGGACAATTGCTGGAAGAAACAGGAAAGTACCACCAAAGAGCAGCTTACCTGAGTCTGGATGCGGTTGAGTCCTCTGAACCACAGGATCTGTCCCCTGCGCAGCTCCATCTCAGCGAGGTCAATTTCATCCGCACCTTCAGTTAGCACCTCATCAGGGATGTCCTCTTTGGGGATGCCGTGACCGGCCTCCTTCAGGAACTTGAGGCGGTGGGTAGGGATGGCAGTGATGAACTGGCCCCAGAGCAGCTCACCAACACCTATGAACACACACCAGAGCCACTGATCGATGGTGAGGGCCGTGCAAGAGAATGGCTTCCCTCCAAACTGCACAATGATGATCTGCAGAGCAAAGGTTCCCAGTACGACGCAGCAGAAAATGGGGTTCCGGTAGATTCCCTCAAACACATTCCTCTCTCCATGGATCTTGCGGGCATTGATCTCGTTGAAGAGCTGCATCATGACAAAGACGTTGAAGATGATGGTGTAGTGTTCAGACGGTGGTGAATGGAGAGGGGTGTTCCGGCCGCTATCAATGCTAAAGAATTTCTCACCTTTTAGGGGCAGAAAAATGTTTTCTGTAAATAAGTGATGTGAAAGTTCAAAATGCATAGTGTTTCACGTCAAGAGGAGCACTGATGGGAATTTTCAATAAATATATGTTACTGTTAATTAAAAAAATACGGTCGAGTGTAATGTCCACTGAGATATAGTATGTATTCAAACTCCACAGAATGGAGTCTTCTGTGCAACTGTTCCTTAACCCACGGGCACTGTAACTCGTGATAAACTTGTCTAATCAGTCTGCAGAAGCACAACATGGGAACATTTACAGTAAAATCTCCTGAAGCACTATGACATGCTTTAGGTAGTATTTGATGTGATCTATCACATGGTAGGGAACAAAGATCAGTGTAATACCAAGATTTACAGATAGGCGGTCTATTACTGGCAGGTTTTCACTATGAAATTTTGAATTGGGATGGAGGCCTTTAACTCTTAACTTAATGCCTTAAACATGAAAGCCTAACATTGAAAAAAAAATACAATATATGTTTGACAAATACATTTTTATACATTTTTGAATGCATCTTTATTGCATTTATTAGTGTAAAAAAACAAGTGAGAGTAAAAGAATGAGAATAAGAAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282592 lncRNA downstream 9620 1984163 ~ 1985385 (-) True G248994
TU282719 lncRNA downstream 71971 1921931 ~ 1923034 (-) True G249118
TU282696 lncRNA downstream 138751 1856041 ~ 1856254 (-) True G249095
TU282695 lncRNA downstream 142899 1851895 ~ 1852106 (-) True G249094
TU282692 lncRNA downstream 145646 1849128 ~ 1849359 (-) True G249091
TU282599 lncRNA upstream 73030 2071732 ~ 2087153 (-) True G248999
TU282805 lncRNA upstream 298863 2297565 ~ 2309005 (-) True G249183
TU282808 lncRNA upstream 316878 2315580 ~ 2321692 (-) True G249186
TU282782 lncRNA upstream 323107 2321809 ~ 2332361 (-) True G249176
TU282837 lncRNA upstream 364679 2363381 ~ 2364654 (-) True G249213
CI01000058_01807681_01819809.mRNA mRNA downstream 175196 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_01694694_01723697.mRNA mRNA downstream 270797 1694679 ~ 1724208 (-) True CI01000058_01694694_01723697
CI01000058_01680894_01693752.mRNA mRNA downstream 300800 1680794 ~ 1694205 (-) True CI01000058_01680894_01693752
CI01000058_01528111_01564969.mRNA mRNA downstream 430036 1527499 ~ 1564969 (-) True CI01000058_01528111_01564969
CI01000058_01510773_01517931.mRNA mRNA downstream 475823 1510350 ~ 1519182 (-) True CI01000058_01510773_01517931
CI01000058_02049299_02051461.mRNA mRNA upstream 50587 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_02100559_02106600.mRNA mRNA upstream 101316 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
CI01000058_02192060_02196086.mRNA mRNA upstream 193094 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02198525_02205429.mRNA mRNA upstream 199794 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02207230_02214219.mRNA mRNA upstream 207567 2206269 ~ 2214219 (-) True CI01000058_02207230_02214219
TU281026 other downstream 1340056 646443 ~ 654949 (-) True G247592
TU282944 other upstream 859781 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1689941 3688643 ~ 3696711 (-) True G250230

Expression Profile