RNA id: TU282837


Basic Information

Item Value
RNA id TU282837
length 684
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G249213
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2363381 ~ 2364654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTAAATGCATTCATTCCTTCTAAGCTGCATTAAAAAGTCTGTGTAAATACATCTTAAAATAATTGCGACTTTAGATGCAGCTTCTGCTACACTGCTACAGACGGCTTTTGTTGATACTGTGTTATATCAAAGTTTTGTATATACCTCCTGTATTATATTGTATTACAGTGGCTATTTAATATTACCTCTAAACTTTGACTGGGCTTGGCATGTTGCATATTAATTGTTCTACATGTAGGAACCTCAAAGCATAGGCCTAGTTTACTTGTGCTACTCTGTAATGAGGTTGTTCAAGATGAGGTCATTTGTAGAGGGCCCGAACTATGACTCAAGCCCAGGGGCCCCTAGCCCCCCAAGTCCTGCCCTGCTCAGCAATGTCATCATGAACCTTCGATTATGATGAACTGAAACGACCAATTTATTTTCAAATGCATTTAATTATTCTAAATTTGATTCTTAACATTAAAAAATATACACCCATCACCATTAAGCTCTGCTGTATCTAAGATCCCCTTCTCGTGCATTTGCAATGACATTAAGATCTATGAGGGGGTCAGGGGGATCCCAAAGTTACATATTCACGGTCTGTTTGTGGAGTATTTTTGTAATAATGTAGATGTTATTTTAGCCACACTGTATAGTAAAAAACAAGCTCATCTACATTTTATAACCCTCTGGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282782 lncRNA downstream 15582 2321809 ~ 2332361 (-) True G249176
TU282808 lncRNA downstream 41689 2315580 ~ 2321692 (-) True G249186
TU282805 lncRNA downstream 54376 2297565 ~ 2309005 (-) True G249183
TU282599 lncRNA downstream 276228 2071732 ~ 2087153 (-) True G248999
TU282603 lncRNA downstream 364679 1995005 ~ 1998702 (-) True G249003
TU282838 lncRNA upstream 224 2366812 ~ 2367547 (-) True G249214
TU282846 lncRNA upstream 45346 2410000 ~ 2410334 (-) True G249222
TU282861 lncRNA upstream 67209 2431863 ~ 2432081 (-) True G249237
TU282862 lncRNA upstream 67794 2432448 ~ 2432661 (-) True G249238
TU282872 lncRNA upstream 80138 2444792 ~ 2445111 (-) True G249248
CI01000058_02235326_02347093.mRNA mRNA downstream 16288 2235326 ~ 2347093 (-) False CI01000058_02235326_02347093
CI01000058_02207230_02214219.mRNA mRNA downstream 149162 2206269 ~ 2214219 (-) True CI01000058_02207230_02214219
CI01000058_02198525_02205429.mRNA mRNA downstream 157944 2198496 ~ 2205437 (-) True CI01000058_02198525_02205429
CI01000058_02192060_02196086.mRNA mRNA downstream 167295 2191796 ~ 2196086 (-) True CI01000058_02192060_02196086
CI01000058_02100559_02106600.mRNA mRNA downstream 256729 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
CI01000058_02366247_02370447.mRNA mRNA upstream 1572 2366226 ~ 2370756 (-) False CI01000058_02366247_02370447
CI01000058_02463470_02484038.mRNA mRNA upstream 97651 2462305 ~ 2484038 (-) True CI01000058_02463470_02484038
CI01000058_02507677_02545533.mRNA mRNA upstream 142940 2507594 ~ 2546413 (-) True CI01000058_02507677_02545533
CI01000058_02548351_02550351.mRNA mRNA upstream 183356 2548010 ~ 2550548 (-) True CI01000058_02548351_02550351
CI01000058_02558119_02571796.mRNA mRNA upstream 193374 2558028 ~ 2573230 (-) True CI01000058_02558119_02571796
TU281026 other downstream 1708432 646443 ~ 654949 (-) True G247592
TU282944 other upstream 493829 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 1323989 3688643 ~ 3696711 (-) True G250230

Expression Profile