RNA id: TU282149


Basic Information

Item Value
RNA id TU282149
length 382
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G248613
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3107773 ~ 3108154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAATCCGCTTTCCACCGTCGGGCCGAACGGATGAATGGTAAGGAACGGTTTCAGTTGTATTTCCAACTGAGCCCGGTACGGCACGGAACGATTACAAACCGTTCTCCGCCCGTAATTAGCCAACCCTGCCGAACCGTACTGCTGGAATGCGAGTAGGGACGTGACGTCGTCACTCAGGATCGGTCACTTGTCTGTTGTTTGGCTGCCAGTTTCTCCGTAGCTTGCTAAACATGATATTTGAGCAACATGAACACAAATTAATCACACAATTAAAAGAAATAACTGATCATTCTACATAACGCGGCCACTATTTACATCGCATATCGTGTGTAAACTCTTGCGTTACTAAGGCAACGACTGAAAAGCTCCGTTATCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282130 lncRNA upstream 142950 2964493 ~ 2964823 (+) True G248594
TU282102 lncRNA upstream 199576 2891351 ~ 2908197 (+) True G248566
TU282110 lncRNA upstream 228985 2867222 ~ 2878788 (+) True G248574
TU282053 lncRNA upstream 422139 2685275 ~ 2685634 (+) True G248519
TU282050 lncRNA upstream 434111 2673375 ~ 2673662 (+) True G248516
TU282150 lncRNA downstream 855 3109009 ~ 3109249 (+) True G248614
TU282104 lncRNA downstream 3630 3111784 ~ 3114371 (+) True G248568
TU282154 lncRNA downstream 10914 3119068 ~ 3119298 (+) True G248618
TU282094 lncRNA downstream 28144 3136298 ~ 3141022 (+) True G248560
TU282111 lncRNA downstream 41791 3149945 ~ 3150383 (+) True G248575
CI01000058_03066079_03101574.mRNA mRNA upstream 6199 3066079 ~ 3101574 (+) True CI01000058_03066079_03101574
CI01000058_03034418_03038200.mRNA mRNA upstream 69429 3034418 ~ 3038344 (+) True CI01000058_03034418_03038200
CI01000058_02979997_03027744.mRNA mRNA upstream 79629 2979997 ~ 3028144 (+) True CI01000058_02979997_03027744
CI01000058_02964886_02978501.mRNA mRNA upstream 128878 2964886 ~ 2978895 (+) True CI01000058_02964886_02978501
CI01000058_02911431_02958568.mRNA mRNA upstream 149205 2911431 ~ 2958568 (+) True CI01000058_02911431_02958568
CI01000058_03169524_03172961.mRNA mRNA downstream 60891 3169045 ~ 3173702 (+) True CI01000058_03169524_03172961
CI01000058_03181624_03193630.mRNA mRNA downstream 73266 3181420 ~ 3195924 (+) True CI01000058_03181624_03193630
CI01000058_03201861_03220295.mRNA mRNA downstream 92828 3200982 ~ 3220724 (+) True CI01000058_03201861_03220295
CI01000058_03503653_03506062.mRNA mRNA downstream 395224 3503378 ~ 3506296 (+) False CI01000058_03503653_03506062
CI01000058_03644271_03645229.mRNA mRNA downstream 536117 3644271 ~ 3645229 (+) True CI01000058_03644271_03645229
TU281441 other upstream 1310041 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 1651326 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1819503 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 2510602 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 2652029 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 1586254 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 1586308 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 1586308 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 1586308 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 1718222 4826376 ~ 4849531 (+) True G250094

Expression Profile