Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016916 |
| length | 570 |
| RNA type | mRNA |
| GC content | 0.36 |
| exon number | 4 |
| gene id | XLOC_008448 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 20403084 ~ 20405796 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002082 | regulation of oxidative phosphorylation | biological_process |
| GO:0097250 | mitochondrial respirasome assembly | biological_process |
| GO:0005746 | mitochondrial respirasome | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009055 | electron transfer activity | molecular_function |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060929-340 | Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial respirasome assembly and regulation of oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial respirasome. Orthologous to human COX7A2 (cytochrome c oxidase subunit 7A2). |
| ensembl_id | ENSDART00000134182 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016885 | lncRNA | upstream | 648085 | 19752881 ~ 19755818 (+) | False | XLOC_008436 |
| TCONS_00016886 | lncRNA | upstream | 649100 | 19752919 ~ 19754803 (+) | True | XLOC_008436 |
| TCONS_00018924 | lncRNA | upstream | 682149 | 19688987 ~ 19721754 (+) | False | XLOC_008435 |
| TCONS_00018923 | lncRNA | upstream | 695053 | 19688875 ~ 19708850 (+) | False | XLOC_008435 |
| TCONS_00016884 | lncRNA | upstream | 695407 | 19688875 ~ 19708496 (+) | False | XLOC_008435 |
| TCONS_00016917 | lncRNA | downstream | 5773 | 20411292 ~ 20458876 (+) | False | XLOC_008449 |
| TCONS_00018925 | lncRNA | downstream | 19115 | 20424634 ~ 20458876 (+) | True | XLOC_008449 |
| TCONS_00016931 | lncRNA | downstream | 477441 | 20882960 ~ 20885734 (+) | False | XLOC_008453 |
| TCONS_00016932 | lncRNA | downstream | 485800 | 20891319 ~ 20892743 (+) | True | XLOC_008453 |
| TCONS_00016933 | lncRNA | downstream | 491584 | 20897103 ~ 20901355 (+) | True | XLOC_008454 |
| TCONS_00016913 | mRNA | upstream | 8654 | 20364595 ~ 20395249 (+) | True | XLOC_008447 |
| TCONS_00016912 | mRNA | upstream | 9138 | 20363859 ~ 20394765 (+) | False | XLOC_008447 |
| TCONS_00016908 | mRNA | upstream | 40117 | 20352134 ~ 20363786 (+) | False | XLOC_008446 |
| TCONS_00016918 | mRNA | downstream | 123678 | 20529197 ~ 20541185 (+) | False | XLOC_008450 |
| TCONS_00016919 | mRNA | downstream | 123738 | 20529257 ~ 20535245 (+) | False | XLOC_008450 |
| TCONS_00016920 | mRNA | downstream | 123749 | 20529268 ~ 20535518 (+) | False | XLOC_008450 |
| TCONS_00016922 | mRNA | downstream | 125130 | 20530649 ~ 20540616 (+) | True | XLOC_008450 |
| TCONS_00016923 | mRNA | downstream | 138251 | 20543770 ~ 20643827 (+) | False | XLOC_008451 |
| TCONS_00016911 | other | upstream | 41931 | 20355795 ~ 20361972 (+) | True | XLOC_008446 |
| TCONS_00016899 | other | upstream | 405128 | 19990123 ~ 19998775 (+) | False | XLOC_008443 |
| TCONS_00016873 | other | upstream | 1063899 | 19335667 ~ 19340004 (+) | True | XLOC_008431 |
| TCONS_00016870 | other | upstream | 1073960 | 19324727 ~ 19329943 (+) | False | XLOC_008430 |
| TCONS_00016857 | other | upstream | 2317087 | 18086702 ~ 18086816 (+) | True | XLOC_008420 |
| TCONS_00016921 | other | downstream | 123761 | 20529280 ~ 20535484 (+) | False | XLOC_008450 |
| TCONS_00016934 | other | downstream | 761623 | 21167142 ~ 21177049 (+) | True | XLOC_008458 |
| TCONS_00016935 | other | downstream | 774575 | 21180094 ~ 21198286 (+) | True | XLOC_008459 |
| TCONS_00016937 | other | downstream | 846672 | 21252191 ~ 21252282 (+) | True | XLOC_008463 |
| TCONS_00016942 | other | downstream | 847060 | 21252579 ~ 21261192 (+) | False | XLOC_008464 |
