RNA id: TCONS_00016920


Basic Information

Item Value
RNA id TCONS_00016920
length 873
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_008450
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20529197 ~ 20541185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCCATCACATTTGTTAGCCATCGCCCTGAAGTTAATGTGTAGCATGTAGGTTTGGCATCACGATCAGCCTGGCCAGCAGCATTCACCACGGCAGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGAGGGACATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCCATTCTCAGCTATCTCCGTGATGGATTTGTGAATTTGCCAAAAAGCAGACAGAGCATCATGGAGCTCCTAGCAGAGGCCAAGTATTACCAGATTCAGGGCTTGATAGACTTGTGCCAGAAGGAGCTACAGGACAATAAGGAAAAGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCCTATACAAGCAACTCTGATGACAACCTGCTCAAGAATATCGAGCTGTTTGAGAAGCTGTCTCTGAGCTACAGCGGTCGTGTGCTCTTCATTAAAGATGTAATTGGAGATGAAATTTGCTGCTGGTCTTTTTACGGACAGCACCGCAAACTTGCTGaggtctgctgcacatccatcgTTTATGCTACTG

Function

GO:

id name namespace
GO:0035024 negative regulation of Rho protein signal transduction biological_process
GO:0051260 protein homooligomerization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5610 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

Ensembl:

ensembl_id ENSDART00000140087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016917 lncRNA upstream 70392 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA upstream 70392 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016885 lncRNA upstream 773450 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 774465 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00018771 lncRNA upstream 820772 19700416 ~ 19708496 (+) True XLOC_008435
TCONS_00016931 lncRNA downstream 347442 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016932 lncRNA downstream 355801 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 361585 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00018926 lncRNA downstream 469215 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA downstream 482131 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00016914 mRNA upstream 123472 20403084 ~ 20405796 (+) False XLOC_008448
TCONS_00016915 mRNA upstream 123748 20403130 ~ 20405520 (+) False XLOC_008448
TCONS_00016916 mRNA upstream 123749 20403903 ~ 20405519 (+) True XLOC_008448
TCONS_00016913 mRNA upstream 134019 20364595 ~ 20395249 (+) True XLOC_008447
TCONS_00016912 mRNA upstream 134503 20363859 ~ 20394765 (+) False XLOC_008447
TCONS_00016923 mRNA downstream 8252 20543770 ~ 20643827 (+) False XLOC_008451
TCONS_00016927 mRNA downstream 12694 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016926 mRNA downstream 12694 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016925 mRNA downstream 12694 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016924 mRNA downstream 12694 20548212 ~ 20643547 (+) True XLOC_008451
TCONS_00016911 other upstream 167296 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 530493 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1189264 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1199325 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016857 other upstream 2442452 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016934 other downstream 631624 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 644576 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 716673 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 717061 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 902115 21437633 ~ 21437728 (+) True XLOC_008468

Expression Profile

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