RNA id: TU283723



Basic Information


Item Value
RNA id TU283723
length 730
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G250013
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4451527 ~ 4452571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGACTGTATGTCCACATGACCCACAGCTGCACTGAATCAAAACTCTCACCTGGAGGAACAGTTCAGTTCACCCAGAACTGAAAGTTCCTATTGAACTTCTTTTTTTTTCCCATGCGAGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATTTGAGTAGTGACAGACTGAAATCAGTCTATTTTTAGCCATTTTAAAGGAATAGTTTACCCCAAAATTAAAATTGCCATCATTTACGGACTGTGGAACAACATGAGGGTGAGTAAACCATGACAGCATATTCATTTTTCGTTGAACTAATCCTTTAATTGTAGAGTAAATATTCAACATTATTTCAGTTTGGCTGTAGTTCATACTCCAGTAATACAGTGGAGTTTTGTAAGTGTGGAATTCTGACTAACTCTCCACAAACCTTTCGTCAAATTGGGGGCTGGGGATGCTGGCAAAATGAAAACAAGGTGGCCGCTAAGCAGTTGAGAAGTTCATCCAAAGTTGACTTTCTCTCTTTCCATCGACTTCTCTCTCTATCTCTCCCCCCTCTCCTTCCTCTAGGCTCAACTGCTTGAGAACGCATCTGGTAACATTTACCTCGTGACTTAAAACTTTTCTCTACTATTATACAACAGGGCCCTAAACACAACACAAACACACACCAAGTCTTGCTAACTTTTTACAATGGTAACAAGACCAGACCAGGGCCTTACCCTCCCGTGGGCTTATTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283680 lncRNA upstream 30735 4420348 ~ 4420792 (+) True G249979
TU283681 lncRNA upstream 33263 4417925 ~ 4418264 (+) True G249980
TU283682 lncRNA upstream 37890 4363707 ~ 4413637 (+) True G249981
TU283668 lncRNA upstream 110543 4340772 ~ 4340984 (+) True G249970
TU283597 lncRNA upstream 210632 4240237 ~ 4240895 (+) True G249899
TU283764 lncRNA downstream 89428 4541999 ~ 4542243 (+) True G250035
TU283786 lncRNA downstream 224342 4676913 ~ 4677151 (+) True G250049
TU283776 lncRNA downstream 234064 4686635 ~ 4689520 (+) True CI01000058_04678629_04687645
TU283812 lncRNA downstream 275238 4727809 ~ 4738445 (+) True G250075
TU283841 lncRNA downstream 431434 4884005 ~ 4884279 (+) True G250098
CI01000058_04405407_04408449.mRNA mRNA upstream 42132 4405407 ~ 4409395 (+) True CI01000058_04405407_04408449
CI01000058_04360496_04365634.mRNA mRNA upstream 85409 4360496 ~ 4366118 (+) True CI01000058_04360496_04365634
CI01000058_04344622_04358133.mRNA mRNA upstream 93394 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
CI01000058_04303891_04308850.mRNA mRNA upstream 142530 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04272001_04275349.mRNA mRNA upstream 176096 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04466648_04523385.mRNA mRNA downstream 13625 4466196 ~ 4523483 (+) True CI01000058_04466648_04523385
CI01000058_04556260_04565696.mRNA mRNA downstream 103586 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04584028_04613429.mRNA mRNA downstream 131457 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04637318_04650366.mRNA mRNA downstream 184647 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04656762_04675421.mRNA mRNA downstream 203745 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
TU281441 other upstream 2653795 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2995080 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3163257 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3854356 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3995783 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 241837 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 241891 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 241891 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 241891 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 373805 4826376 ~ 4849531 (+) True G250094

Expression Profile