Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU283838 |
| length | 639 |
| lncRNA type | intronic |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G250095 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000058 |
| NCBI id | null |
| chromosome length | 5213219 |
| location | 4884462 ~ 4885100 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU283841 | lncRNA | upstream | 183 | 4884005 ~ 4884279 (+) | True | G250098 |
| TU283812 | lncRNA | upstream | 146017 | 4727809 ~ 4738445 (+) | True | G250075 |
| TU283776 | lncRNA | upstream | 194942 | 4686635 ~ 4689520 (+) | True | CI01000058_04678629_04687645 |
| TU283786 | lncRNA | upstream | 207311 | 4676913 ~ 4677151 (+) | True | G250049 |
| TU283764 | lncRNA | upstream | 342219 | 4541999 ~ 4542243 (+) | True | G250035 |
| TU283863 | lncRNA | downstream | 19840 | 4904940 ~ 4905140 (+) | True | G250120 |
| TU283867 | lncRNA | downstream | 33272 | 4918372 ~ 4918573 (+) | True | G250124 |
| TU283931 | lncRNA | downstream | 199540 | 5084640 ~ 5137852 (+) | True | G250187 |
| TU283965 | lncRNA | downstream | 295801 | 5180901 ~ 5181105 (+) | True | G250219 |
| CI01000058_04806751_04821030.mRNA | mRNA | upstream | 62767 | 4806751 ~ 4821695 (+) | True | CI01000058_04806751_04821030 |
| CI01000058_04792565_04803181.mRNA | mRNA | upstream | 81058 | 4792565 ~ 4803404 (+) | True | CI01000058_04792565_04803181 |
| CI01000058_04782847_04791049.mRNA | mRNA | upstream | 92907 | 4782847 ~ 4791555 (+) | True | CI01000058_04782847_04791049 |
| CI01000058_04777182_04780095.mRNA | mRNA | upstream | 104086 | 4776542 ~ 4780376 (+) | True | CI01000058_04777182_04780095 |
| CI01000058_04769469_04774262.mRNA | mRNA | upstream | 109977 | 4769469 ~ 4774485 (+) | True | CI01000058_04769469_04774262 |
| CI01000058_04923557_04926609.mRNA | mRNA | downstream | 38190 | 4923290 ~ 4927654 (+) | True | CI01000058_04923557_04926609 |
| CI01000058_05091135_05091372.mRNA | mRNA | downstream | 206035 | 5091135 ~ 5092015 (+) | True | CI01000058_05091135_05091372 |
| TU283837 | other | upstream | 625 | 4826376 ~ 4849531 (+) | True | G250094 |
| TU283770 | other | upstream | 187301 | 4694462 ~ 4697161 (+) | False | G250039 |
| TU283771 | other | upstream | 187430 | 4694462 ~ 4697032 (+) | True | G250039 |
| TU283772 | other | upstream | 187552 | 4694408 ~ 4696910 (+) | False | G250039 |
