RNA id: TCONS_00016925


Basic Information

Item Value
RNA id TCONS_00016925
length 3165
RNA type mRNA
GC content 0.53
exon number 25
gene id XLOC_008451
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20543770 ~ 20643827 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGCGGAAGAAAGATGCACAACATGCTGCAACAGAAGGCAAAAAAAACTCAGTTGAAAGCAAAGTTGATGATCGACTTGTGAAGCAGATTATGGAGGAGGCGGTGACCAAGAAGTTTGTCCATGAAGACAGCAGCCACATTATTGCACTTTGCAGCTCCATCGAGGCTTGCTTAAGCCACCTGCTGAAAAGGAGAGCGGCAGGATTCCTCCGCAGTGATAAAATCGCTGCCCTCTTCACTAAGATCGGCAAAGTTAACACCACAGTGAGCGAGATCTGCCGCAAGGTTCAAGAACAGCTGCAGCAGCAGGCTGAAATCACCAGAACCCAGAGCACAGGACAGGAGTCCCTTAGGAGGCAGGGTTCCTCTACCGGACGGGCCCCTCAGCCACTCTCCGCACAGGCTATCAAGCACATATGGGTCCGCACTGCCCTCTTTGAGAAAGTCTTGGACAAGATTGTGCAGTATATTGTGGATAATGCAAGTAAGTATTATGAAAGGGAGGCTCTCATGCACGACTCTGTGTTTGGACCCATACTGGCGGCACTGCTAGTTGGACCTTGCGCACTGGAATACACAAAGCTGAAGACATCAGATCATTTTTGGACTGACCCATCAGCCAATGAGCTGGTCCAGAGACATCGAATCCATGGAGCCCACAGAGGCCAGGAGGTGTCGCCCGGCCGCAGACCTGCACTGGGGATTCGAAAGCGTCAGTCCTCAGGAAGCATGTCTGAGGATAAGTTTGCAGCCTCAGCGAGAGAGTATGTTGAATCTCTGCACCAAAACTCACGTGTTCACTTACTGTACGGGAAGAACAACGTACTCGTGCAGCcgaagaaggACATGGAGGTGCTGCGCGGTTACCTGTCCCTTCATCAGACGGCAGAAACCCTCACACTGAAGTGGACGCCCAATCAGCTCATCAATGGCACTCTGGGAGACTGTGACCTGGAGAAGAGTATTTACTGGGACTATGCTTTGACTGTGCCTTTAAGACAGATTGTCTGCATTCATTGCCACCAACCGGACTGTGGAGGTACTCTGGTGTTGGTCAGTCAGGATGGGATCCAGCGGCCTCCTCTGCACTTTCCTCCTGGAGGACATCTGCTGGCCTTCCTCTCCTGCCTGGAGACGGGTCTCCTGCCCCGGGGTCAGCTGGAACCCCCTCTCTGGTCCCAGAGGGGAAAGGGTAAAGTCTTCCCAAAGCTTCGTAAGAGGAACAGCACGGCCCGTTTGGTGGATCAGGATGGGGACGGGGAGGACCAGATTGCTGCAGACTATGTGTTTCGCATCGTTTATCCGGGTCACCGTCACGACTCAATCACTATAAACTACCACCACAGCACGGGCAGTCGTGCGCCCTCTCTGGACgacgatgaggaggaggaggatagacTTCACGCTATGATCTCTATGATCTGCTCACGGAACCTCACAGATCCTAATGTCATGAAAGACCACGGGGACCTGATGGAGATGCAGGGTTTTGGCGGCAGCCCCTTGTCATGGCAGCAGGGCGAGTGCACCAGTCATATGTCATCATGTCTGTCCTGCTCCACCGGGGGCAGCAACGCCTCCCCTTCCTGTGTTGAAAGAAGTAACGGATGTTTCCCTTCTGTGTCCAGGATTCCTCTGAAGATGCTGTGCCAAAATATGAAGAGACAGATTGTGTCTCGAGCGTTTTATGGCTGGCTGGCCTACTGTCGGCATCTGTCAACAGTGAGAACACATCTTTCAGCGCTGGTCAACCACAACATCGTTCCCCCGGACAAGCCCTGTGAAGCCTCTGGAGGCCTCAGCAAAGATGTGTGGAGTAAATATCAGAAAGACTGTAAGAACTATAAGGAGCTGGAGCTGCTGAGGTTGGTTTATTATGGAGGGGTGGAGCATGAGATCAGAAAGGAAGTGTGGCCGTTTCTGCTGGGACACTACAAGTTTGggatggataaaaaaaatatggCTCAGattgaTGAGAAAATCACAGCAAGGTATCAGCAGGTGATGAGGGAGTGGAAGGCCTGTGAAGTCATTGTGAAGCAGCGAGAGAAAGAGATGCAGTCGGCCATTTTCGCCAAGTTGTCGTCGGGAAGCAGTATAGACAGCCACGTCCTCAGACTTATCCACAGAGACTCCACTATCAGTAATGAGGTGTTCATGTCTGTGGACGAGCCTGACGCCGGGGGTCAGGATACCTCATGTGAAGACAGCACACCCACTTTAACCACAGTGGTCACCCCGGCCATGCTAGCCCCAGACGAGAGGCCACTGGTGGAGTTCGACTCTCCAGACTCAGGCCTGCCCTCCTCCAGGAACTACTCCGTCGCGTCAGGACATTCCCAAATCATGTCCAGCATCGACGATGGCCAGAGACTTGAGGAGCAGGGCGGACGCGGCTCTCTGAGTGAGGACAAACTGTGCAGTCAGCTGGACAAACTCACGACCACCAGCAGCTCTGAGGCCAGTTGTTTTGTGTCATATGCTGTGCAGATCGAGCTGTTGGACACGGTGGCGCTGAACTTGCACAGAATAGACAAAGATGTCCAGCGCTGCGATCGCAACTACTACTATTTCACTAGCAGCAACCTGGAGAAACTGCGCAACATCATGTGCAGTTATGTGTGGGAGCATCTGGAGATCGGCTATGTACAGGGCATGTGTGACCTGCTGGCCCCATTAATGGTCATTCTGGATGACGAGTGCTTGGCCTACAGCTGCTTCACTCAGCTGATGAGGAGGATGAGTCAGAATTTCCCCACCGGAGGGGCCATGGACACTCATTTCGCCAATATGAGGTCACTGATACAGATCCTTGACTCAGAGCTGTTTGAGCTCATGCATCAGAATGGAGATTACACTCACTTCTACTTCTGCTACCGCTGGTTCCTCCTGGACTTCAAAAGAGAGCTGCTGTATGAGGATGTGTTTGCAGTTTGGGAGGTGATCTGGGTTGCCCCTCGTATATCCTCTAAGCACTTTGTCCTGTTCATTGCACTGGCTCTGGTGGAGGTTTACCGGGACATCATCCTGGACAACAACATGGACTTCACTGACATCATCAAGTTCTTTAACGAGATGGCGGAGCGCCACGACGTGCAGCACATTCTCCGAATGGCGCGGGAGCTGGTACACAAGGTGCAGACCCTCATCGAGAACAAGTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-131119-52 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human SGSM2 (small G protein signaling modulator 2).

Ensembl:

ensembl_id ENSDART00000183871

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016917 lncRNA upstream 89336 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA upstream 89336 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016885 lncRNA upstream 792394 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 793409 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00018771 lncRNA upstream 839716 19700416 ~ 19708496 (+) True XLOC_008435
TCONS_00016931 lncRNA downstream 239413 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016932 lncRNA downstream 247772 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 253556 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00018926 lncRNA downstream 361186 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA downstream 374102 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00016918 mRNA upstream 7027 20529197 ~ 20541185 (+) False XLOC_008450
TCONS_00016922 mRNA upstream 7596 20530649 ~ 20540616 (+) True XLOC_008450
TCONS_00016920 mRNA upstream 12694 20529268 ~ 20535518 (+) False XLOC_008450
TCONS_00016919 mRNA upstream 12967 20529257 ~ 20535245 (+) False XLOC_008450
TCONS_00016914 mRNA upstream 142416 20403084 ~ 20405796 (+) False XLOC_008448
TCONS_00016928 mRNA downstream 156396 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016929 mRNA downstream 157706 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016930 mRNA downstream 199614 20843161 ~ 20894776 (+) False XLOC_008453
TCONS_00016936 mRNA downstream 559273 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016938 mRNA downstream 608985 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016921 other upstream 12728 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 186240 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 549437 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1208208 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1218269 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016934 other downstream 523595 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 536547 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 608644 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 609032 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 794086 21437633 ~ 21437728 (+) True XLOC_008468

Expression Profile

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