RNA id: CI01000059_00767393_00826328.mRNA


Basic Information

Item Value
RNA id CI01000059_00767393_00826328.mRNA
length 3080
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000059_00767393_00826328
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 765733 ~ 826581 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGGCTGATGGGCGGGGCTTGCTTAGCCAATGAGCGCAGACTTCAGTTAAAGACACTGCAGCGATGAGTTGAGCAGGGCGCGCTACAGTGCTGCACTACAAACTTCACTTTCAATGGCTGATAAACACTAATGTCAGTTAAAATTACAGCACCACAGTGAGGGAAGTTCTCTCGGGCGCTTAGCTGGAGCTCAGATAAGTTGTCCTTCAGCATGTCATTAGTTTAAGACAATTAACGAGATGTTTTAGGGCAATGGAGAGTGAGCAGTCAGAAACATTTGGAGGTGGCGGCGGAGACAATTCATCAGGCTCCGACACGCTGTCAGAAGGCGAGACGCGAACCGAGCCGTATGAACCCGAATTGCAATTTGAGGAATTTAAATGTCACTCCTCAGATTTTGTGGGTCTTGACGGAAAAGTGAAAGGAAATGATTCTGATGAATGCAGCGACGACATAAAAGCAAGAAATGGGGATGACCAAGATGAAGGAGAAAATGAAGGGGACGAGGATGAAATGCCGGATAACATCCTCTACCCCCCCTCCATGCCCTTCCGCAAGTCCAGCAACCCTGAGGTTTCTCACGGCTCCAGTTTAGCGCTGAAATTTAAACGACAACTCAGTGAAGATGGGAAACAGCTACGGAGAGGAAGCCTAGGGGGTGCTCTTACAGGGAAGTACCTGCTGCCATATGCCTCAACCCAGCAGGCATGGTCAGCCACAGGCTCAGAGACCACCAACCTGGTTCGCATGCGCTCCCAGACCCTAGGCAAATCTGCACCCTCTCTCACTGCCAGCCTGCTCTTTAAGACAGTAGCTATACCTCCTCCACGACCAGTGGTTCTTGGCGTGTTAATAAAAGTACAGTCAGGAGGTAACAGTCAGGATTTGAGCATCACTAGCCGGCCACCTCGCACTCCTCGGCGTCTGCGTTTCCTGGGAAGCAGCGCCCTTACCCGAAGCAGGTATGCTGGCACATCAGCCAGTGATCATGGTGGATATCTCTCCATTATATCAAGGGGATTTTGTGTTTACTATGCCTTCTACTTTTTATCGAGTCCTCTTCACAGGAACTCTGAGATGAAACATGTAATAGAGGAAACAAGAAAAAATGGATTGTGCTTCAGCAGAAATATTTGTCTGGGGGCCAATGGATCATATCCTTACGTCCCTGACAGACTCAGATGGGCTAGAATGGAGCTCGACCTCACAGACTCTCTCTCTCTCATGCCCATCTTCCATATGGAAGCCTCTCAAGTCTCCCACCCACTGAGAACAAAGAGGTCTCTCACATCCTGTCATGACCGTTGGCCAAAGCCTCCTACCTCACCTGCAATGACCTCATTGCTGCCCGTTTTCATCGTCCCCAGTCTTCATGTTCATCCTCATCAGTATCGGACAGGATGCACATGCACAATGTGATTTACGTACAAAACATCCTTTGTTGGTCCTGGAACTTCCTATCAAACAAATATAACCCTAACCACAACCCTAATCCTAATCTCCTCTATTTTACTAGACCTTATAACAAATCTTTAGACACATGGAAGAGGGCTCTCTGTTAGCATTTGCATTCATCTTAAAGGGAGTTGCGTGGCTAGTGCTTTGATTTAGTAAAAAGGCTGCTGGTTGGCCGTCAATAGAGAAGTATGGATTTTGTCCACAGAATGGTCATAATTATGCCATCTACCAGGAATTTGAGGGAACAAAAAAGATTTTGATGTGTAATGTATTGGAAGATTGTATTTTTTAGGGCTGTCCAAGTTAACTTAATTGAATAGTTCACCCAAAAAATGAAAATTGTCCAAACCCATGAGAGTTTTGATCATCTTTGGAACACAAATGAAAGTGTTTTTGAAACCTGAGAGATTTCTGTCCCCCCCATTGATAGTCCCTTCACCTACAACTTTTGTGATCTCAATCAACTTTAGAAGCATCAAAGTAATCCCTATGATGTATAGATATTGATTTATATGATGAATTTATGTGAACAGATAGGCTTTTATTCATATAAACATTGATCAACTCGCATACATGAAGAACATCAATTATTGTAAACACAGAAGCTCAACCATACTTGTTTGACACAAGAGAATAAACCTGAAGGTATGTATGTGTGCATACAGGTATGTGCAATTTTTTTTTTTTTTTTTTTTTTTTTAACACCAATAATTATCACCTTTATTTTAATTTAACTTTACAGGTTTTGTTTTACTTTCTAAAGACTGGTCAGAAATCATGACATTTTTTCAGTTATTTTATGTAGGCATTATTTTTAACTGTAAGAGATTGAAAAAAAAAAATAATACAAATAATTAATACAAATCTTTTGTAGCAAATTAGCTCAAAAAGGGAAATATGAATAATTAAGTATAACTTATTATAATTATAAATATTTTGATCAGTTGACAGAATTAACTTGCAGAATTATTACGATCAGTAAGCCTGTTCGACCAGGTCTAGCAACTCCCAAAAAAGGTTATTTTCATGGTCACAGAAAAATAACTTTTTCTTACTGGGTACAGTACTACTCGGAGCGTGTAGCTGTGATCGCATCGTTAAAGGGACTTTGTTTTGCAAGCATTGCCTACAGAATCAATACTCAGGTCGATGTGCACTATTTTTTTTTTTTATTACATGAACTAAATCACGAGCACGGGATATAACAGGCAGATACAACAACAGTCAGAGTATATTTAAAAAGTACAAATATTACAAGTGTTCTTTGGCCAAACGATCGATTTGTGTGAGGAACAGACCCAAAAGCGATCACCACATGCATCTACCATAAATCTCAGTTCCTGTGGACACATTCAAAAATTGCCACCAGAAAAAGCATTACGTCAGCTTTGATTGTGAAATGGCATTGGCTCTCATGTGTCTCGTGACCTACTGCTTCATGATAAAGGGAGTGTCTTTTGTATGACTGCATGCGTTTACAGAGCAGGATCATTTTCAGTGATTAAAACCTTAAGTTCACATATCTTCACAAAGATATATTGTATGGTTTCAGAAAACTTGTAATGCAACACAACTCGTTTGCAATAGTTTTATACTGTTTTTGGTCAGTTTTTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285547 lncRNA downstream 82716 682740 ~ 683017 (-) True G251549
TU285538 lncRNA downstream 87975 677515 ~ 677758 (-) True G251540
TU285535 lncRNA downstream 91289 674208 ~ 674444 (-) True G251537
TU285532 lncRNA downstream 95666 669223 ~ 670067 (-) True G251534
TU285527 lncRNA downstream 105493 660013 ~ 660240 (-) True G251529
TU285571 lncRNA upstream 60086 886667 ~ 886876 (-) True G251569
TU285505 lncRNA upstream 106909 933490 ~ 937795 (-) True G251511
TU285585 lncRNA upstream 113061 939642 ~ 939860 (-) True G251583
TU285588 lncRNA upstream 125563 952144 ~ 952360 (-) True G251586
TU285589 lncRNA upstream 128823 955404 ~ 955643 (-) True G251587
CI01000059_00697568_00720771.mRNA mRNA downstream 44962 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00570850_00600462.mRNA mRNA downstream 164875 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00513674_00528840.mRNA mRNA downstream 235784 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00476366_00482307.mRNA mRNA downstream 283426 475994 ~ 482307 (-) True CI01000059_00476366_00482307
CI01000059_00456370_00458895.mRNA mRNA downstream 306293 456284 ~ 459440 (-) True CI01000059_00456370_00458895
CI01000059_00853242_00855219.mRNA mRNA upstream 26173 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00867492_00873239.mRNA mRNA upstream 40084 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00991306_01000173.mRNA mRNA upstream 164450 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
CI01000059_01022397_01031991.mRNA mRNA upstream 195157 1021738 ~ 1032204 (-) True CI01000059_01022397_01031991
CI01000059_01042330_01049708.mRNA mRNA upstream 215669 1042250 ~ 1049927 (-) True CI01000059_01042330_01049708
TU285270 other downstream 385596 369931 ~ 373400 (-) True G251313
TU285506 other upstream 425135 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1270116 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2644894 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3926957 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4411205 5237786 ~ 5238299 (-) True G254203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00061043 True 771 lncRNA 0.49 3 NC_007116.7 55067499 ~ 55114917 (-)