RNA id: CI01000059_00867492_00873239.mRNA


Basic Information

Item Value
RNA id CI01000059_00867492_00873239.mRNA
length 1789
RNA type mRNA
GC content 0.43
exon number 8
gene id CI01000059_00867492_00873239
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 866665 ~ 873239 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAATCCCGGAAGAGGCAAAGGCGCTCTCGCTTTTGGCCCCTGCCGCACCCGTAGCCAGCCTGATGAGTGGAGGAGGACTTCTGCCCATTCCCAGCCCTGCTACGCTACAGAACCGAAGTCTTCCTTTAGCTAATCTGGGAGTCCTGAAGTCTAGTTTGGACACGTCTGTGGCGGCTCTGAGTGCAATCGCTTCGCAACCTCCGCTCATGGGTAATGTTGATCCCTCTAAAATTGACGAGATCAGGAGGACGGTGTATGTCGGCAATTTGAATTCACAGAGCACCACAGCAGAGCAGCTCCTCGAGTTCTTCAAGCAGGTGGGAGATGTGAAGTTTGTTAGAATGGCGGGAGATGAAACACAACCTACACGTTTTGCTTTTGTGGAGTTTTCTGATCAGGAATCAGTGGCACGAGCACTTACATTTAATGGAGTCATGTTTGGTGATAGGCCACTCAAAATTAACCACTCCAATAATGCCATAGTGAAGCCTCCAGAGCTCACGCCACAAGCTGCGGCCAAAGAGCTGGAGGACGTCATGAAGAAAACAATAAAAATCGCTCATCCAGTAGATCCAGACATTCCAGAAGGTCAAGAACTCGCTCTCGCTCCCCGTCACACTCACGAAAAAAGCGATCCAGGTCAAGGCACAGGGACCGAAGGAAGGACAAGGACGGTAAAGTTAGGAAGGGCGATGACTGGGATGAAAAGAGGTTGCGGGACAAAAAGGGAAGGACGCCTTCCAAAGGCTACGTTGGCTCCAGACGTTCCCGCAGTACAAGCAGACATAAAAAAAGAAGTAGATCTCGATCCAGGTCACCAAAGCGAAGCGCCAGAGGCAAGAAAGATAAAAAGAGAGATAAAGGATGGGACAGTAGCAGGGGAAGGATGGAGAGCTCAACGTCCAGGAGGAAAAGCAGGGACTCTGACCATAAATCTAAACCCTCACTGGTGTGTCTGATTTTTATTTTAAACAAGTAGCTCAATTTACACACGCATTGACCTTCATTCAGTAAAAATAATTTGTATTGGTGGATTGATGCAAAAATGTTGGTCTGAGGTTAGGTAACGCCCTTAATATTAACGTTAAATTAACACATATTACAGAGTTGTTCCTAGAAAATCTTTGTGTCATACTTTGTTTATAGCATCATGTAAGTACAATCACTTTGTTCACATTGTGAAACTACGTCATTACCAGGTACAGCTAAACTCTGGAGGCTTACTAACTAACAGTTAAACAGTGTGGTGGTAATCAGATAGTTGTGGGTTTCGTCGTGTTAGAATAGCTAATGTCAATAAGTCTGTATACCACTGTCACTTTCTTCTGGATTCAACACAATGGATCAATAACTGGTTTTCGTTGATGCTTTTGCAATTATATTAGTGATGTTTGAAAACTCTAAACCTAATGCTTATGATGGAGGACTCATTGTTCCTCGTGCACCTCAAAGAGCTCACTGCACGTTCAGATTAAATAATTTGCACAACATGTAGCTCAGCTGTATCGCAGTGTGCTGCTCTAGTTTTTATAGATAAGAAACAGAGGATCACAGCTGATTCTTGCAAAGATTGACTTTTAAAGACTTTTTCATGCTTGTCTGCCCCCGATAACTATCAGTATGACCGTTTTTACTGCTAAGCTTTTATATTTCCTCTAAATGTGGCATCTTTTTGATAAAGCGTGAACCGTTCTTACAGGATTTATCTTTTTGACATTTTTGCCATCTGATGAAAACACTTCTGACATGATTACTTAGTATATCAAAGTATCAGTCTGATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285547 lncRNA downstream 183648 682740 ~ 683017 (-) True G251549
TU285538 lncRNA downstream 188907 677515 ~ 677758 (-) True G251540
TU285535 lncRNA downstream 192221 674208 ~ 674444 (-) True G251537
TU285532 lncRNA downstream 196598 669223 ~ 670067 (-) True G251534
TU285527 lncRNA downstream 206425 660013 ~ 660240 (-) True G251529
TU285571 lncRNA upstream 13428 886667 ~ 886876 (-) True G251569
TU285505 lncRNA upstream 60251 933490 ~ 937795 (-) True G251511
TU285585 lncRNA upstream 66403 939642 ~ 939860 (-) True G251583
TU285588 lncRNA upstream 78905 952144 ~ 952360 (-) True G251586
TU285589 lncRNA upstream 82165 955404 ~ 955643 (-) True G251587
CI01000059_00853242_00855219.mRNA mRNA downstream 11381 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00767393_00826328.mRNA mRNA downstream 40084 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00697568_00720771.mRNA mRNA downstream 145894 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00570850_00600462.mRNA mRNA downstream 265807 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00513674_00528840.mRNA mRNA downstream 336716 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00991306_01000173.mRNA mRNA upstream 117792 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
CI01000059_01022397_01031991.mRNA mRNA upstream 148499 1021738 ~ 1032204 (-) True CI01000059_01022397_01031991
CI01000059_01042330_01049708.mRNA mRNA upstream 169011 1042250 ~ 1049927 (-) True CI01000059_01042330_01049708
CI01000059_01062456_01073742.mRNA mRNA upstream 189217 1062456 ~ 1073742 (-) True CI01000059_01062456_01073742
CI01000059_01118201_01130248.mRNA mRNA upstream 244477 1117716 ~ 1130248 (-) True CI01000059_01118201_01130248
TU285270 other downstream 486528 369931 ~ 373400 (-) True G251313
TU285506 other upstream 378477 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1223458 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2598236 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3880299 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4364547 5237786 ~ 5238299 (-) True G254203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00061044 True 1879 mRNA 0.47 12 NC_007116.7 55160348 ~ 55201172 (-)