RNA id: CI01000059_01022397_01031991.mRNA


Basic Information

Item Value
RNA id CI01000059_01022397_01031991.mRNA
length 2012
RNA type mRNA
GC content 0.39
exon number 8
gene id CI01000059_01022397_01031991
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1021738 ~ 1032204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGAAAAAGGAAACAAATGCCTTACGTAACACTACCCATCCCCATCCATTGAATGAGGAAGAAACTTCACCTGTAAATTACAGTACATCAAGCCGCTCCTGAGGTAGGCGTGTTCCTATAGACTTTCTTGAAGATTGCTCTTTTAACACTGTTGAGTGGGTTGATGAATGTATTAACTGCAAAGTACTGGAGGAGGTTCAAGCTGTTCAGGATGGGGGACTGCTGCATGTCAGGTGAAGACAGGGAAAGTGCCAGGATTCACCATGAAATTGAGAGACAGCTTAGGATGGACAAAAAGGATGCATCCCGACAACTGAAACTTTTGCTTTTAGGTACAGGGGAGAGTGGGAAGAGTACTTTCATTAAGCAGATGAGAATTATACATGGCAGGGGCTACACAGAGGAAGACAAGAGGGCCTATGCCAAGCTGGTGTACCAGAATATCTTTGTTTCTATTCACAACTTGCTTCAAGCCATGGAGAACCTGAAAATCCATTTTGCTGATGGACAAAACACAACATATGCTGCAATGCTTAAAAAAGTGACCCCTGAAACAGTACTGTCACTGGAGGCTGAATATGCTGAAGCCATTAAGAGTGTGTGGAAAGACCAAGGAATGCAGAAATGCTTTGAACGCAGGAGAGAGTTCCAGTTGTCAGACTCTACCAAATATTACCTTGATGACATTGACAGAATATCTGCAGCCTTTTACTTGCCAACTCTGCAGGATATTCTACGAGTCCGAGTTCCAACCACAGGCATTATTGAGTACGTCTTTGACCTTCAGACTGTCATTTTCAGAATGGTTGATGTCGGAGGCCAAAAGTCAGAAAGACGGAAGTGGATCCATTGTTTTGAAAATGTCACTTCCATCATCTACCTGGTGGCTCTGAGCGAGTACGATCAGGTCTTATATGAGTGTGCGAAAGAGAACCGCATGGAGGAGAGTAAGGCACTTTTTAAGACAATCATCTCTTACCCCTGGTTCCAGGAGTCATCTATCATCCTCTTCCTCAATAAGACAGATATCCTGAAGGAGAAGATCTCAAAGTCAGACCTTGTAAATTTTTTTCCACAATATACAGGAGCCCCGAATGAGAAATTGAGCCCGTGGACAATCTGCCTAACTCATCCAGAGGAATTGATCGTGCTGGGGAATGGCCCTAAAAATGATGCAGAAGCTGCAATGAAGTTCATCTTGAGTATGTATGAAGAACAGAACAGGGACACACATAAACGCATCTACGCACATTTCACATGTGCAACTGACACTGAAAATATCCGCTTTGTTTTTAGCGCTGTGAAGGACACCATTATGCGGAACATCCTGTCCACATTTAACTTGGGTTAAGTGATAAAAGTGCTTTTATATATGGCTAGATTGAATGTTTGTTTTGTTTTTGTTTTTTACCTCTGAGTCAATTAAAATGTGAATGTGATCTGTGTGTGAGCGCTGGAATTATGTCAAAGTGCATTCTGTGAATTCTTCTTGCATTGGCGGAAATTCAAGTGAAAGTGTTTTAAAGTGTTTTAATTGTAAAATAAGTCAGTAACACTTTATTTTAGGGTATTTTAACTAGTTGCTTATTAGCATGCATATTACTAGAATATTAGCTGCTTATTAGTAATTAATAAGAACATATTAATGCCTTATTCTGCATGACCTTATTCTACATTTTTAATCCTACCCAATACCTAAACTTAACAACTAACTTACTAACTATTAATAAGCAGTAAATTAGGAGTTTATTGAGGGAAAGGTCGTAGTTAATAGTGAATACATCTTCCCTATACTAAAGTGTTACCAATAAGTCTTACAGGTTTGGAAAACAAAATGAGGGTAAGTAAATTTTAATAGATTTTTTTTTTTTTTTTTTTTTTTTTTATTGTCCCTGCTTTGTTCTTAGGGACAATATTTACACTCTGGATTTACAGGGACATTTTTTCTTTCCTTCATGACAGCATTTTTCTAATTATATTAAACATTATGCTTGATAGGCTCAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285595 lncRNA downstream 47829 973553 ~ 973909 (-) True G251593
TU285591 lncRNA downstream 62301 959224 ~ 959437 (-) True G251589
TU285589 lncRNA downstream 66095 955404 ~ 955643 (-) True G251587
TU285588 lncRNA downstream 69378 952144 ~ 952360 (-) True G251586
TU285585 lncRNA downstream 81878 939642 ~ 939860 (-) True G251583
TU285499 lncRNA upstream 84145 1116349 ~ 1116684 (-) True G251505
TU285510 lncRNA upstream 130804 1225656 ~ 1225704 (-) True G251516
TU285504 lncRNA upstream 144315 1176519 ~ 1185331 (-) True G251510
TU285637 lncRNA upstream 235660 1267864 ~ 1268136 (-) True G251631
TU285641 lncRNA upstream 244132 1276336 ~ 1276569 (-) True CI01000059_01275053_01276421
CI01000059_00991306_01000173.mRNA mRNA downstream 21565 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
CI01000059_00867492_00873239.mRNA mRNA downstream 148499 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00853242_00855219.mRNA mRNA downstream 166454 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00767393_00826328.mRNA mRNA downstream 195157 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00697568_00720771.mRNA mRNA downstream 300967 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_01042330_01049708.mRNA mRNA upstream 10046 1042250 ~ 1049927 (-) True CI01000059_01042330_01049708
CI01000059_01062456_01073742.mRNA mRNA upstream 30252 1062456 ~ 1073742 (-) True CI01000059_01062456_01073742
CI01000059_01118201_01130248.mRNA mRNA upstream 85512 1117716 ~ 1130248 (-) True CI01000059_01118201_01130248
CI01000059_01144728_01188827.mRNA mRNA upstream 111920 1144124 ~ 1188827 (-) False CI01000059_01144728_01188827
CI01000059_01191120_01223818.mRNA mRNA upstream 158200 1190404 ~ 1223818 (-) True CI01000059_01191120_01223818
TU285270 other downstream 641601 369931 ~ 373400 (-) True G251313
TU285506 other upstream 219512 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1064493 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2439271 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3721334 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4205582 5237786 ~ 5238299 (-) True G254203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00061053 True 1937 mRNA 0.37 7 NC_007116.7 55543580 ~ 55560937 (-)