RNA id: TCONS_00016931


Basic Information

Item Value
RNA id TCONS_00016931
length 692
lncRNA type retained_intron
GC content 0.55
exon number 4
gene id XLOC_008453
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20843161 ~ 20894776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACACAGAAGCTTCACGTTCTTTACTTTTAAAGATCACATGTTGAATGATTCTTTAAGCttgaggttttttattttaaggtttttgtCTCAGAAATGGGGTTGGAAAAGCAGCCTGACTGGATTGCCACCTTGTTTTCTGGGTTTCTCAGGTCACCGCAGCCATCTACTGGACAGACGCCAATGGTGTCACCACGGAGCGAGACCACGCCAATTCCTGTGCCCACACAGGTGCGAAACTACCAGCGGATCAAACAGAACCTCTCCAGCAGCCCAACCACAACACTTTATGGCTCTCCCAGGTCAGGCACAGTGCGTCGCTCCAACACAAGCCCCATGGGCTTCCCTAAAATGGTGTCTGCTTCCCCAAGCCCTGCAGATACTGTCCAAACAGTGGGGCGACGTCTCTCTACTGGCAGCTCTCGGCCCTACTCACCCTCTCCACTGGTGGGCACGATTCCTGAGCAGCTCGGCCACTGTTGCTGTGGTCACCCTCAGAGCCATGAACCGCGCAGTCGCAGCTCTTCAGGCGGTTCCCCAGTGCCATCCTCTCAGTTACTGGGCGCTCGTCTTCAGAGTGCGCCGACACTGACGGACATCTACCAGAGCAAGCAGAAGCTCCACAAGCAGCTGTCTGACCCAGTGCACCCCACCTCCTCCGCCTATCCCAGCAACCACTCTCCTCAGCTCGG

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0140059 dendrite arborization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0021986 habenula development biological_process
GO:0048675 axon extension biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04139 Mitophagy - yeast
ko04212 Longevity regulating pathway - worm
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko01001 Protein kinases
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-090218-30 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within dendrite arborization; habenula development; and regulation of dendrite morphogenesis. Predicted to be active in phagophore assembly site membrane. Is expressed in habenula; hatching gland; polster; sensory system; and trigeminal placode. Orthologous to human ULK2 (unc-51 like autophagy activating kinase 2).

Ensembl:

ensembl_id ENSDART00000156563

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016917 lncRNA upstream 424084 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA upstream 424084 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016885 lncRNA upstream 1127142 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 1128157 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00018924 lncRNA upstream 1161206 19688987 ~ 19721754 (+) False XLOC_008435
TCONS_00016932 lncRNA downstream 5585 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 11369 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00018926 lncRNA downstream 118999 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA downstream 131915 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00018772 lncRNA downstream 278301 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00016929 mRNA upstream 73836 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016928 mRNA upstream 76765 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016923 mRNA upstream 239133 20543770 ~ 20643827 (+) False XLOC_008451
TCONS_00016927 mRNA upstream 239413 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016926 mRNA upstream 239413 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016936 mRNA downstream 317086 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016938 mRNA downstream 366798 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA downstream 366824 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016940 mRNA downstream 366845 21252579 ~ 21258324 (+) False XLOC_008464
TCONS_00016941 mRNA downstream 366845 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016921 other upstream 347476 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 520988 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 884185 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1542956 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1553017 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016934 other downstream 281408 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 294360 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 366457 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 366845 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 551899 21437633 ~ 21437728 (+) True XLOC_008468

Expression Profile

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