RNA id: TU285506


Basic Information

Item Value
RNA id TU285506
length 64
RNA type TUCP
GC content 0.38
exon number 1
gene id G251512
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1255599 ~ 1255662 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCTTTTGGCACATTGAGGATCACGCACAAATACAGGCTCCACCGCGATACTGCTGTAGTATGGATAAAATTGAGAATGCTAAGAGTGAGGGAGAAGAGGTGAAAGTCACTATGCTGGAAAATGCAAATGGAGCAGGAGAACACAAGGATGTCAATCAAAAAGCTGAAAAGCCTCAGTGCACCAGAAAAAAATGTAAGGAATCTGCAGCAAAGCCGAAAGGGAACCAGAAGATGGAGTACCTGCGGGCTAATAAAGGACTCGTAGCCACTGTACTGATTTCAGCTGTTATTATATTCACTGTTGTGGTTGCCATGCTTGTCACTAAAGAAACAGATGGGCATAGTCACTCAAAAGTGCACAATGCCACAGAAATTCCATAGCAACAATTGCAGCAGACTGGTGGGACAAATCCGTTTTTGTTTTCTGATGTTAAATTATGTTTTATGTTATAAAGTGTCTTCTGATCTAACATGACATTTTCTGTTTTAAACATACTTAAAGGGGAAGTTAATCCTATTTTCAACAACATTGGGCCTATTTACATATTTCAAAATATCTTCATTTGTGTATACCACAAAAGAAACAAAATGATACAGGTTAGTATGGAATGGAGAAAAAACATAAGATGAGAGGAAAAATCCAACGCTATCTCACGACCAATTCGTACGTATTTTGCGAGGTGGCTAATGTGAGGTGGCGAGTGAGGTCATACAAATTCGTACGATTTGTCTAAACCCCAGTGACGGGTAGGTTTAGGGGCGGGGTTTGGGGTAGGTAATTCGTACGAATTCATACGAATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCCAACCCGGAAGTTAGCGGCGCACGGGTTCCCTCGATCGAAAGCCTATGCATTTTTCCCATAGATTTTTGGAAAATCGCAAAAAATAAGCTCTGTGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCATCAGATATAAAAAGCTAACAGTAGGCTATAAATGGACTACAGCACACCATGGTCGCGGATCAACATCACCACCACCAAGCTTCCTCAAACTTTATTTAAAAAACAACTTTATTTAAAAACATGCTCGCTGATTATGATCTGCGCTGTGAATGAATACTTATCCACTTTTTCATGAGAAATGCTGTCCAAATGTCCTGTTTGTCATGATGACGTCTAAAGTCCCTGCCAAAGGAAGTAGTCCCTTTTAGCAATTTGTTAGCAACCGCCGTTTTTAAGACACAATAAAGGTTTAAAAAAAATCACAAGCGGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAACGTGTAAATATTTAGAGGCTTTGTTAACCACAGACCTTATTTCAGGCGATTTAGCAAAAACCCATTAAAAAAACCCATAGACTTTAGGGCGATGGAACCGGAAGTCCTAAAACTCTAACTTGCTTCTGGGTTTTGCCTACAAAAACACGTCATCCCTGAGGTACTCTATTTGGCAAGTCATAAAATACGCACGAATTAGCAAAAAAACGTATGAATTCGTATAAGTGAGGTCGTACGAATTCTAACGATTTAGCCACCTCGTAAAAAATACATACGAATTGCCGTGAGGTCGGGTTGAAAAATCACCATGTCACTTTAGGGGCTATAGTTTTAAGATTGTTTGTATAAAGACGATGATTTAAACACACTTTAAACACACAAAAAAAAAAAAATCACAGCAAGTTTGTTCACTAAGCTCATTATTTTCACTTTGTCATATAAACATGACTCAGCAGGACAGGCTATCAAGAAAAAACACATTTCCCCATGAAAATTGTGCTGATAGTTTGGTATGTAAACATAAGGAGATGTGATTGAAAGCAAGGGCATTTTCTAAGGTCAAGTGCACTTATCCTTTTGACAAAAGTGACAAAAGAAGCACAAACATGATTTTTTGTTTTTGCTGTGATTACAAACGAGTCATCTTAAAGACAGGCTTTGTTTGAGGCCAAAGATTATTTATAAAAAGCACTTATTAGCATTAACGTTTCTTGTTCACAACCAAATTTTGTATGTTGGAAACCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285510 lncRNA downstream 26012 1225656 ~ 1225704 (-) True G251516
TU285504 lncRNA downstream 66385 1176519 ~ 1185331 (-) True G251510
TU285499 lncRNA downstream 135032 1116349 ~ 1116684 (-) True G251505
TU285595 lncRNA downstream 277807 973553 ~ 973909 (-) True G251593
TU285591 lncRNA downstream 292279 959224 ~ 959437 (-) True G251589
TU285637 lncRNA upstream 12202 1267864 ~ 1268136 (-) True G251631
TU285641 lncRNA upstream 20674 1276336 ~ 1276569 (-) True CI01000059_01275053_01276421
TU285653 lncRNA upstream 49024 1304686 ~ 1305865 (-) True G251644
TU285729 lncRNA upstream 149521 1405183 ~ 1405490 (-) True G251702
TU285734 lncRNA upstream 171051 1426713 ~ 1426967 (-) True G251707
CI01000059_01227965_01233051.mRNA mRNA downstream 17856 1227327 ~ 1233860 (-) True CI01000059_01227965_01233051
CI01000059_01191120_01223818.mRNA mRNA downstream 27898 1190404 ~ 1223818 (-) True CI01000059_01191120_01223818
CI01000059_01144728_01188827.mRNA mRNA downstream 62889 1144124 ~ 1188827 (-) False CI01000059_01144728_01188827
CI01000059_01118201_01130248.mRNA mRNA downstream 121468 1117716 ~ 1130248 (-) True CI01000059_01118201_01130248
CI01000059_01062456_01073742.mRNA mRNA downstream 177974 1062456 ~ 1073742 (-) True CI01000059_01062456_01073742
CI01000059_01275053_01276421.mRNA mRNA upstream 19114 1274776 ~ 1276421 (-) False CI01000059_01275053_01276421
CI01000059_01338710_01351160.mRNA mRNA upstream 83048 1338710 ~ 1351160 (-) True CI01000059_01338710_01351160
CI01000059_01463769_01531967.mRNA mRNA upstream 208084 1463746 ~ 1531967 (-) True CI01000059_01463769_01531967
CI01000059_01620492_01627212.mRNA mRNA upstream 363966 1619628 ~ 1627852 (-) True CI01000059_01620492_01627212
CI01000059_01845526_01858308.mRNA mRNA upstream 589774 1845436 ~ 1859344 (-) True CI01000059_01845526_01858308
TU285270 other downstream 871579 369931 ~ 373400 (-) True G251313
TU286339 other upstream 841035 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2215813 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3497876 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 3982124 5237786 ~ 5238299 (-) True G254203
TU289512 other upstream 4980444 6236106 ~ 6242792 (-) True G255092

Expression Profile