RNA id: TCONS_00016932


Basic Information

Item Value
RNA id TCONS_00016932
length 537
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_008453
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20843161 ~ 20894776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGGTGGAGCAGCTGGTGTTGTATATGAAAGCAGCTCAGCTTCTGGCCTCCTCGCTGCACCTCGCCAAAGCCCAGATCAAATCTGCCAAACTCAACCCGTCTACTGCCGTCAAACAGGTGGTGAAGAGTCTGAACGAGCGCTACAAGAGCTGTATTTCCCTGTGCCGTCGCCTCACAGACAAACTCAACCACTTCTTCTCTGACAAGCAGCGCTTTGTGGACGAGATCAACAGTGTGACAGCAGAAAAGCTCATTTATAACCACGCTGTGGAGATGGTGCAGTCGGCCGCTCTGgatgagatgtttcagcagacTGAGGACATCGCTTATCGCTACAACAAAGCCTCCATGCTGCTGGAAGGCCTGACCAAGATCCTCCAGGACCCAGCTGATATTGAGAACGTTATTAAATGTGAGTGAATTTagtaaaattaatcatttacatttcattatatATTCACTTTCAAAACACTCACTTTAGGCAATTAGGACTCTtcttaaatcaaattaaatataatgacaaaaaatgtaatac

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0140059 dendrite arborization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0021986 habenula development biological_process
GO:0048675 axon extension biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04139 Mitophagy - yeast
ko04212 Longevity regulating pathway - worm
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko01001 Protein kinases
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-090218-30 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within dendrite arborization; habenula development; and regulation of dendrite morphogenesis. Predicted to be active in phagophore assembly site membrane. Is expressed in habenula; hatching gland; polster; sensory system; and trigeminal placode. Orthologous to human ULK2 (unc-51 like autophagy activating kinase 2).

Ensembl:

ensembl_id ENSDART00000156386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016931 lncRNA upstream 5585 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016917 lncRNA upstream 432443 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA upstream 432443 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016885 lncRNA upstream 1135501 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 1136516 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00016933 lncRNA downstream 4360 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00018926 lncRNA downstream 111990 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA downstream 124906 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00018772 lncRNA downstream 271292 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018773 lncRNA downstream 347681 21240424 ~ 21245834 (+) True XLOC_008461
TCONS_00016929 mRNA upstream 82195 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016928 mRNA upstream 85124 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016926 mRNA upstream 247772 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016936 mRNA downstream 310077 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016938 mRNA downstream 359789 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA downstream 359815 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016940 mRNA downstream 359836 21252579 ~ 21258324 (+) False XLOC_008464
TCONS_00016941 mRNA downstream 359836 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016921 other upstream 355835 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 529347 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 892544 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1551315 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1561376 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016934 other downstream 274399 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 287351 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 359448 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 359836 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 544890 21437633 ~ 21437728 (+) True XLOC_008468

Expression Profile

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