RNA id: TCONS_00018927


Basic Information

Item Value
RNA id TCONS_00018927
length 733
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_008456
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21017649 ~ 21037778 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTGTTTTATTCACTTTTGGTCCACAGACCTCAATCAAGTTTGATTCGTGGCCCttaataagaaaaagtttgggcaccccttttTAGACAGTCTTGTACAGATCcattgcgccctcctgtggaaAACAGATAAAACACAGTCAAACAGCGCTAAGAGAATCTAAGAGTTGGTTTAGTGTAGAGTTGGGGATGATTCAAATGAaaagttcatatatatatttacacacagaaCCAGTGAGCAACAACAGTCAATGGAAAAAGCCACTGTAAAAGATAAGCAATGGTGGGAAAGTGCAGTACATGTTTTAACAAGCCATAATTCGAAATGTTTgggaaatacatttgtattacatGAAAATCATCAGTCAAACAtactaactaacgttaacattgtACACTTCGTTTTAAATTTAGCCTGTTGACACTCACAGCCAATCAGCCTTGATGACATCATCGAACGTCATGCTTCCATTTAGAACGCGTTCCATTCCATCAAGTTGCGAGCTGCTTGCAGAGCCAGAGGAGGAAGCAGAGCTGAAGGGGAAAAGTGAAACGTCGACTACACAGCGTTTACAGTTTATACAGCTTTACAGCACCAGGGCCAGATTTCTGCAGCATATTCTGGATTTCGGGACGAAGAAGCCATGACATGCCGGATGAGTCAGCAACAACGATAGAGACTCACAACCCCTCTCCACCACCAGTCGGATTCCAAGTGAACTACTCTAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016933 lncRNA upstream 116294 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00016932 lncRNA upstream 124906 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016931 lncRNA upstream 131915 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016917 lncRNA upstream 558773 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018772 lncRNA downstream 126257 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018773 lncRNA downstream 202646 21240424 ~ 21245834 (+) True XLOC_008461
TCONS_00018928 lncRNA downstream 209748 21247526 ~ 21251557 (+) False XLOC_008462
TCONS_00018929 lncRNA downstream 211688 21249466 ~ 21251557 (+) True XLOC_008462
TCONS_00016950 lncRNA downstream 231445 21269223 ~ 21272557 (+) True XLOC_008465
TCONS_00016930 mRNA upstream 122873 20843161 ~ 20894776 (+) False XLOC_008453
TCONS_00016929 mRNA upstream 208525 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016928 mRNA upstream 211454 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016925 mRNA upstream 374102 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016936 mRNA downstream 165042 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016938 mRNA downstream 214754 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA downstream 214780 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016940 mRNA downstream 214801 21252579 ~ 21258324 (+) False XLOC_008464
TCONS_00016941 mRNA downstream 214801 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016921 other upstream 482165 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 655677 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 1018874 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1677645 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1687706 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016934 other downstream 129364 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 142316 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 214413 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 214801 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 399855 21437633 ~ 21437728 (+) True XLOC_008468