RNA id: TCONS_00016934


Basic Information

Item Value
RNA id TCONS_00016934
length 4158
RNA type unprocessed_pseudogene
GC content 0.44
exon number 30
gene id XLOC_008458
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21167142 ~ 21177049 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGACCTTCGTCATCATGGCTCTGAATGTTAGCTGTTGTTGGAAAGGGCTCCTCCTGATCTTTTTCCTCCTCGTCTGTGTCAATGGAAAAACAGCAAGGCCATCTTTCATGGTGATGTTTCCTATAGTGATTGAGTCAGGATCTGAGGCCAAACTGTGTGCAAGTCTTCTGAATCCCAATGAAAGCCTCGTCATGAACATTTATCTAAATGATGGGAACCAGAGCACATTACTGCTGCAGGAGAAAGCTGAGCAAGAGTTTCACCGCTGCTTTAACTTCAAGGCTCCTCTAGCAAAAGCAGAAACAGTGCAGAAAATCAAGGTTGAACTCCAGGGAAAGTCCTTCGAGATGACTGAGGAGAGAAAAGTCATGTTCAAATCCTACGATCCTCTGACCTTTATCCAGACGGATAAACCCATCTATATTCCTGGACAAACTGTTAACTTCAGAATTGTTACCCTGGATAAAAACTTTGCACCACTTGATCAGCAGGTTTGATGTGACAGTCAAGATAACAGGATTGGTCAATGGACAAATGTTTCCTCAACAAGGTGGATTTTGCAGCGTTCATATGAATTAAACCCAGAATGTCGTGAAGGCACATACAAACTAAAGACTTTTATTGGGGAAATGGAGGTCTTACATTATTTCAAGGTAAAAAAATACGTTTTGCCTAAGTttgaagttacagtaaaaaaaccaAATAAAGTGAGTGTTGATGAAGAAGAACTATCAATTGAGGTTTGCGCAAAataCACTTATGGACAGCCTGTACCTGGTAAATCATGGGTGAAAGTGTGCCGTAACTCTGTGCCCTACTTTCATACCAAAGATTTCAATCCATTGTGTTCAGAGGAAACCACTGAAATAACAAAAACAGGCTGTGCCATCCATAACTTTGGTGTATCAGTCTTTTTGAACTCCACACTAAAGGAGAGACTAAAAGATTCTCTTCATGTTGAGGCAGTGGTTACAGAAGAAGGAACAGagATCACCATGGCCAAATCTGAATCTGTACCTCTTACGTATGAAATTGGCAAAGTAAAAGTTATTGACCTGCCCAATACATATGAACATGGATCAGTCATAGAAGGAAAAATCAAACTTTTCGATTTTAAGGATGCTCCAATTCCAAACAAAGAGGTTTATCTTTTAGAGGGTGAAAACTGGTCCTCCAAACTGCTCCTAAATCTCACTACAGACAGTGATGGACTGGCCAGCTTCTCTCTTAATACATCTAGTCTTTCTAAAAAAGACATTTCTCTGATTGCAAATGTGTATCCAGATACCCGTTTTCGTCAGTACAAAACACCTTACTTCTCTAGAgataaaaaaacagttaaactcTTCCAGACCGCAACTCCATACTCCCCAACATTTAGTAAACTGATAATAGAGAATATTGAGCAGCCGATAAAGTGTGGCACTGAGATTACAGCCACTGTAAAGTATTATTTTGTTGGAGAGACGGTTGAAGACTTCAATACTGACATTGTCTATATAGTCTTGTCCAAAGGAGTGATTGTTCATCATGGGTATGAGAAAGTTGAAGTGAAGTCTTCAAATGGAGTAGCAAGTGGCACAATGTCCTTCGAACTGTCTGTTGGTGCAGATGTGGCTCCTGTAGTGCGGATTCTAGCGTACTGTGTTCTGCCCAGTGAAAATATTATTGCCGCTAGCAAAAGTTTAGACAttgaaaaatgttttggtaataaGGTGTCTCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGCCTCAGTGCTGTTGATCAGAGCGTCCTGATCCTGGAGTCAGGAAAACGTCTAGATGCTGACAAGATCTTCAGCCTGCTGCCATTTCAGTATGTGTATTATCCTTACAGTGCTGAAGATGAGCAGCCGTGTCTGCCTGTGAGACCCCGTCGATCTGTGCTGACAGACAACGTCTATAACAGCTTAAAGAGTGTGGGGCTAAAAATGGCTTCAAATTTGGCTGTGCGAGTCCCTGAGTGTCTGTCATTCAGAGGCTTGACTTATCACAGATTCAGAGATATAGGTACTGTACCTGTACTATTATTCCTATTCATGCTTGATGTATCATACCTCTGGTCGAGTGGGATTGGGGTCTTCAATAGAAAGTTCTACTTTTGATAATTCGGCAGTGACGATTCGGACCATCTTTCCAGAAACGTGGATCTGGGACCTTGCTGAAGTGGGTGACTCTGGATCAACTGAAGTTCCTGTCACAGTTCCTGACACCATCACCACTTGGGAGACGGAGGCCTTCTGTCTGTCCTCCACAGGTCTGGGTTTGGCTCCTCCCGCTCAGCTGACAGTATTCCAGCCCTTCTTCCTGGAGCTCTCTCTACCTTACTCCATCATCCGTGGGGAGATCTTTGAGCTCAAGGCCACTGTCTTCAACTATCTGTCCAAGTGCATCATGGTTAAAGTGAGTCCAGCTCCTTCCTCAGACTACACTCTCAAAGCCTCCTCTGATGATCAGTATTCATCCTGTCTCTGTGCTAATGGAAGACAAACCTTTAAATGGATCCTCACTCCTTCTGTTCTTGGAGTGGTGAATGTTACAGTCAGTGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACATCGTCACACGAAGTCTGCTTGTACAGGCTGAAGGAATTGAAAAGACCGAGACCAACAGCTGGTTACTGTGTCCAAAGGGTGACAGTCTCTCAGAGAACGTGGATCTGACTGTTCCTAAAGATGTGATAGAGGGATCAGCAAAATCCTCCGTTTCAGTCATTGGAGACATATTGGGTCGAGCACTGCAGAATCTTCATGGATTATTACGGATGCCGTACGGCTGTGGAGAACAAAACATGGCTGTTCTTTCTCCCAATATTTACATTCTGCAGTATCTGGAGAACACAAAGCAGCTCACATCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGTGGATACCAGAGACAACTGAACTATAAGCATTTTGATGGGGCTTACAGCACATTTGGTTATGGTGATGGGAACACATGGTTGACTGCCTTTGTCCTGAGGTCTTTTGGCAAAGCTCAGAAATACACATTTATTGATCCACAAATTATTCAGAGTGCAAAGGATTGGTTAATAAGCAGACGGGATTCAGACGGCTGTTTTATCCAACAGGGAAGACTGTTTAACAACAGAATgaagGGTGGAGTGACTGATAATGTGACCATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTCCAGTCACAGATCCTGTTGTCACTAAAGGCTTGTCATGCTTGAGGTCTGTCATCGAGGATGTCAAAAACACTTACACCACTGCTCTGCTGGCCTACACTTTCAGTCTGGCTAGAGACACCAACACTCGACAGCAGCTTTTCAGCAAACTGGAGGATCTTGCTATTTCAGATGGTCCTCTTGTCCACTGGTCTCAGTCTGCATCTGCTGATGACTCTGCTTCTCTGGATGTGGAGATCAGCTCATATGTGCTGCTAGCTGTTCTCACTGCAGATTCACTCACTACAGCTGATCTGGGCTTTGCTAACAGGATTGTCAGCTGGCTTGTGAAGCAGCAGAATGCCTATGGAGGATTCTCCTCGACACAGGACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACCACTTTGATGTCAATCAGGACAACAAGTTACTGTACCAGGAGAAACAGCTGGCCAATGTGCCAGGCAAATACAGCATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAGATGGCTCAGTTCTACAACATTCCCACTCCTACTGAAGCTAAAACATTAAGTATTGATGCTGAGGTTGAGGGAGATTGCAAGAAAACCTTTGGACAAAATCTAATGTTAAATGTCACTGTGACataTGATGGTCCCCAGAATAGAACTAATATGGTTATTGTGGACATTAAACTCTTATCAGGATTCACAGCTGATACATCAATGGTGTGTTTTACTGTTAAGGGATTCATTTGATGCATTGATTCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000038499

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018772 lncRNA upstream 2569 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018926 lncRNA upstream 73526 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA upstream 129364 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00016933 lncRNA upstream 265787 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00016932 lncRNA upstream 274399 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00018773 lncRNA downstream 63375 21240424 ~ 21245834 (+) True XLOC_008461
TCONS_00018928 lncRNA downstream 70477 21247526 ~ 21251557 (+) False XLOC_008462
TCONS_00018929 lncRNA downstream 72417 21249466 ~ 21251557 (+) True XLOC_008462
TCONS_00016950 lncRNA downstream 92174 21269223 ~ 21272557 (+) True XLOC_008465
TCONS_00018930 lncRNA downstream 145997 21323046 ~ 21427967 (+) False XLOC_008467
TCONS_00016930 mRNA upstream 272366 20843161 ~ 20894776 (+) False XLOC_008453
TCONS_00016929 mRNA upstream 358018 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016928 mRNA upstream 360947 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016923 mRNA upstream 523315 20543770 ~ 20643827 (+) False XLOC_008451
TCONS_00016927 mRNA upstream 523595 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016936 mRNA downstream 25771 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016938 mRNA downstream 75483 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA downstream 75509 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016940 mRNA downstream 75530 21252579 ~ 21258324 (+) False XLOC_008464
TCONS_00016941 mRNA downstream 75530 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016921 other upstream 631658 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 805170 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 1168367 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1827138 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1837199 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016935 other downstream 3045 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 75142 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 75530 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 260584 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016954 other downstream 260827 21437876 ~ 21437959 (+) True XLOC_008469

Expression Profile

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