RNA id: TCONS_00018773


Basic Information

Item Value
RNA id TCONS_00018773
length 809
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_008461
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21240424 ~ 21245834 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggagtaaacatgtcaggctaaataattcaaatgaattattgacttctgctgtcttttatttcaaaagacatgtttttttgtttgtttttttggaatttaaaaccgcatctttgaatatcttttttgctggagatacttgTATCctaaaacagtatttttaaaaaagtaaataaaatcttactcctaccttaggaatggtacagcagaaaattttgactgttttaaaaccttgacttttcaaaaccacggtataccttgaaaactgttatcgtcccatgcctgttTCTGTCAGTGTTTGGACCGATTTGATGACTCTGTCAGGTAGTTATGTGTAGCATCTGTCTCTGGGAGTTTGATTGTCAGGTGTTTTAAATAACATGCCTTTCCCTGTGCTGTGGTTTATTAGTgcaggttatatatatatatatatgttgtagcgaggcagagggaaaacagcggcacaacaggatgagtttacagacaagtccccggagggtgctttatttacaaagtgaatgtgctgtaaaaaaggtgctcttctttagggtgaggtgctctggtgctccgggaagtaggtgaaggacggtGAGTAGTCGGGTGCAGGATCGTCACTAGCTGGAGTCCgctaaggagagacagagagacaagcattagcacagggagtcatagaaggaatgaagctcatcttctcctggcgtaggttgggcttatatgtctctccgcttgatgagctccagctgtgtccgatcctggcttgatgaaggtccagctgggtgaaatttgcgaccagggcgacgtggcatataatt

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018772 lncRNA upstream 75851 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018926 lncRNA upstream 146808 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA upstream 202646 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00016933 lncRNA upstream 339069 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00016932 lncRNA upstream 347681 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00018928 lncRNA downstream 1692 21247526 ~ 21251557 (+) False XLOC_008462
TCONS_00018929 lncRNA downstream 3632 21249466 ~ 21251557 (+) True XLOC_008462
TCONS_00016950 lncRNA downstream 23389 21269223 ~ 21272557 (+) True XLOC_008465
TCONS_00018930 lncRNA downstream 77212 21323046 ~ 21427967 (+) False XLOC_008467
TCONS_00018931 lncRNA downstream 77222 21323056 ~ 21495896 (+) False XLOC_008467
TCONS_00016936 mRNA upstream 35953 21202820 ~ 21204471 (+) True XLOC_008460
TCONS_00016930 mRNA upstream 345648 20843161 ~ 20894776 (+) False XLOC_008453
TCONS_00016929 mRNA upstream 431300 20801253 ~ 20809124 (+) True XLOC_008452
TCONS_00016928 mRNA upstream 434229 20799943 ~ 20806195 (+) False XLOC_008452
TCONS_00016925 mRNA upstream 596877 20548212 ~ 20643547 (+) False XLOC_008451
TCONS_00016938 mRNA downstream 6698 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA downstream 6724 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016940 mRNA downstream 6745 21252579 ~ 21258324 (+) False XLOC_008464
TCONS_00016941 mRNA downstream 6745 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016943 mRNA downstream 6747 21252581 ~ 21254912 (+) False XLOC_008464
TCONS_00016935 other upstream 42138 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016934 other upstream 63375 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016921 other upstream 704940 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016911 other upstream 878452 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 1241649 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016937 other downstream 6357 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 6745 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016953 other downstream 191799 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016954 other downstream 192042 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016955 other downstream 201822 21447656 ~ 21447800 (+) True XLOC_008467

Expression Profile

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